RNA id: AMCG00003008


Basic Information

Item Value
RNA id AMCG00003008
length 4778
RNA type mRNA
GC content 0.38
exon number 21
gene id AMCG00003008
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9562280 ~ 9575635 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCACTTCTGGGAAAGTCCATCCACAGCGCCGCATCAAAACGGCAGGACAGCCGGAGCGCAGAAGGAggatattttcacatttgaagTAATACTAAACGGGAAAACAACTTTATAAAAGTAATAAGTCTTGGTTATTTTAGTCCAGTAATGCCCGCATTTCCTTAAGAATGACCCAGATTGCAGACGTTTTTAAGGCCGAATCGGACTCTTGTGCGGAAAGGAAGTTTGTTTACATCGAGAAGCCGGGCCTAGTCCAACCTCGCAGGGAGTCCATGGCTCTGGGGGCTCCGATTTGAATTGAGGATCGGAGGTCTCATTAAATGTGGATTTCACAACTCCGGAGACGTGTTTAGCTGAGCATAAAAATGGAGAAGCCCCCTTTTAGGCAGAATCAAGTATGTGGAGCGTGGGAAATGAAGGAGAGGTTGGGAACAGGAGGATTCGGCCATGTCTATTTATACCAACATCTGgAAACCTCTGAGAAGATTGCTGTTAAATCATGTCGTCTTGAACTGAACCAGAAGAACAAAGAGAGATGGTGCcgtgaaatacaaataatgaaaaaGTTAAAGCACATCAATGTGGTCACAGCACGAGAAGTGCCTGAGGAAATGAAGAACATAGCCTTTAATGATCTTCCACTTTTAGCCATGGAATATTGCTCCAAGGGAGATCTTCGGAAAatgttGAATAGGTCTGAAAATTGCTGTGGCCTGAGAGAAAGTGAATTACTCTCCTTGCTGAATGATGTTGGGTCAGGAAtccaatatttacatgaaaataaaattattcacAGAGATCTTAAACCAGAGAACATAGTTCTTCAAGATATTGATGGAAAGTTAGTTCACAAAATAATCGACTTGGGTTATGCCAAAGACCTGGATCAGGGGAGTCTTTGCACATCGTTTGTGGGAACGTTACAGTACTTGGCACCTGAACTTTTTGAGAATAAGCCATATACAGTAACAGTAGATTACTGGAGCTTCGGCACGATGATCTTTGAATGCAGCTGTGGTTTCCGTCCTTTTTTGCACAATCTTCAGCCTGTACAATGGACCAACAAAGTACGGAATAAAGGGCCAATGGACATCATGGCTGTTGAAGAAATGAACGGTGAAGTCAAGTTCTCCACTCACCTACCCTATCCTAACAACCTCAGCAGGACAATGCTGGGGCCCCTTGAGAATGTATTACAGCTGATGCTGAGATGGGACCCTgagcagagagggggagggataAACCCTGACCGAAAACAGCCAGAATGTTTTGCTGTTCTAGATGATATTTTAAGTATGAAGGTTGTgcacatattaaacattacctCTGCAAAAATCCACTCTTTCCAACTGACACATGAAGAAGGACTTCATTCCCTCCAGCAACGCATTGAAATGGAGACCGGAATTGAACATCTAAATCAAGAGCTGCTGCTAGAAACCGGGGTCTCCCTGGACCCTCGGAAACCTGCTGCTCAGTGTGTACTGGATGGAGTTGTAAGGGCCTctatttacacttttttttttcctctcaaatTTCGAATAAGAATGTTGCTATTGATTTTACGAGAACCCAAAACCCAATTGCCCAATGCTTCACTGAGGAAAGTTTGGGGGGAGGCAGTGAGTTACATCTGTGGACTGAATGAAGATTACAGACGGCTTTTCCAAGGCCAAAGAGCAgccatGTTGAGCCTCCTTCGGTATAACACCAACCTTACAAGATACAAAAACTCAATGTTTTCCGTCTCCCAGCAGTTAAAAGCTAAGCTGGACTTCTTCAAGACCAGCATTCAGTATGACTTGGAAAAATACAGTGATCAGATGCAATATGGCATATctTCTGAGAAGATGTTGAAGGCTTGGCAGGAAAATGAGGAGAGGGCAGCAGCTTATGGACAGGTTGCAGAAGTCAACTATTTAGATGAAGAAATAATGTCTCTGCACTCTGAGATTGTTGAACTGCAGAGAAGTCCGTATGCGAAGCGCCAAAGCGATGTCATGGAGCAGCTtgaaGACAAAGCGATTGAACTCTACAGGCAGctgaaagtgaaatgtaaagCTGAGCCACAGCATGGTTACAGTGACAGCTCGGAGATGGTGAGAGTCATTTTGCAAACTGTGCAGAATCAAGACCGAGTTCTGAGGGACCTGTATGCACACTTGAGCAAGATCTTGTCAAGCAAACAGAAGATAATCGATTTGTTCCCGAAGATAGATAAAGCGATCGAGAACATCAAGGAGGCTGACAACACTGTAATGCAGATGCAGATGAAAAGGCAACGAGAATTTTGGCATCTGCTAAAGATTGCCTGTGCTCAGAATTCAACACGCCAATGTATAACTCCAAGCCTAGACGCCTCGAACTCCCCACAGGTCTCGGCATGGACACAGCAAGGGCAACCAATCAGCTCGCCACATCCCCTCACATCCTTACCTGGACCAAACGACAGTGACTCCGTTCCTCGTTTACTCGAAGAGAATCAGAAGTATCTGAGCCAGTTGACAAGTTTGATGCAGGAAACCGTTGACGATCAAGCAAAAAGTATAATGGATCAAGATTGGAAATGGACAAAATATGAATCTCTGGATAGAATAAtaccaaatatttaaatctatttaacgCAACTGATTTTTACTTTTGACTTCATCCTACTTTGACTTCATCACTTGTTAACACTAATGGTATTTATGTACCAACACTTCTTATTTGGCGGTATggctaatttatttaatgaaaatccaCAGAATACCTTTGCCATTTTTCGAAGGATATATCCATGGACAATTGAAAATGCATTCTGACAAAATGTGGTGAAGTTGCTCAGTATGTACACTGCAATTTGCTTAAGAAAGGCTAATGTCCAAGTAGCTATTTCCCATAAATGAAATCTCTTAACACCGCGTCAAACAGAACTATCTTCACTCCGGATGAAGAAAACGGATCATCTGAAATTCCAAATGTTGTGTTACAAAAGTAAGCCATTATGAAGGATAACATAAATACAAGCATATTCTACaattcatgttttacattttttttttttttcagcattttgatTTTAAGATTCAGGTCTATTTTATCTCACCTTTCCATTTTGATTTTGGAATATAATGATTACATTCTAATTATCTAGAGTCACCATCAATAGAGAAATAAAGAAGCCATTTAGATTACTTTAGAAATTGGTAATATGTTAATCCGCTTTATCTGCACTTTTCAATGCTTACTGTGAACCCCGACAGTTTAATGTATCTTTTGTTGAAATATTGTCAAAACAAAGCACAGTAGTAAATATAACTTCCTTTCAACCTGGAATCTTTCATCATTTTATTCAAAGATCAAGACTTTTATGCagttctgtttatatatttttctgtttttgtaaatgtgttcacACTTTTGGCTTTACATGACTCTCCCCTCTGGATCCAACTGTCTTTTGAGGTTGAATTACATGTTTTAGATAtgtagtttaattgtatttatttattatggtttCTGTTCCTGAGTTATACATTTGTTATCCAGTCTTTACTTTGTGTAACTTCTTGATAATTGCCTTTTGTTCCTGAATCTGTGGTTCACTTTACATCTGTAACGAATGTGAAATCTGAGATTAATACTGAAACGTTTCAAATTGTGACCTTTAGAAACTGATAGATTTTACCAGGTCcatgttgatttaaaataaattgaatggtAAAAAATGACATTAGTTTGTTAGAAAAATATTGAGATGTCAATGttgttaaaacatgcagtgaaaGTGTTAGATGAACAACCATGTACAGAGGGATTGTGAACTCTCTTCAGTTATCAGGAAAGCCATATCCAAGTATTGCCTTATTGCAAGGCCATAAAATTGAATTCAGTTTAGGTCAATCTTTGGCATATAGTGCATTTGTAATTGCCAAGTTAGAATTGGAAGGAATTAtaattgtgaatttaaaaagtttCCCGTTGCTTTCAGTGGTTTTCTATTTTTCACCCTTGTATAGCATGAAAATCAAATGTAAGAATTAcaattatatagttttaatttgattttaagatCAGTTTGTCAAATTATATTGTCAGAGCCTTAATACAGAATGGATTGCTAGTTTTCAATTTTGCTACTGTCGGGTGTCACTTACATTACGGGTCCACATCTCTGATCTGGAATAGCACTCAGTTTTTCTACGGAAGTGAATTAAGTGAAGCcccacaagaaagaaaatggcttTGTATTTCTACACAGTTCCACTGACATGTTACAGTTTGAGTATATAAGCAACCGAACAACTTCTTATCATGTATATTTGAACAAATTTCTTACTGCATATGTGATGTCAAGGATTTCCAGGAGATAGActgcatataaaaaatatatatattggaaagaaattaaataaatctattttttctgttttattttttttcaatgtgtgtAACCTGATTCTTTATGGAGCAAATGAGTGTAGATTAATTAGACAGTTCCAGAGTTCATGTGGTACATTGAATTGTATATGGGATGTATGTTTTATGGCAGTACTGTACAGATCTAGGTGTTTTCAGTTCTGTGAGATATGTAAATTGTGACtgaatgcatattaaaaaaaatacattaatatggaaagttctttctttattttttcataccaAAAAGACAGCCACTTTCAGGCATAGATCACATTAAACTTATCttgattgtatgtatatatgaagaAATTCAAGCAATGTAATCCACGTTTTGAGCTTACTGTAATTAttccaaataaatcaattacacCAG

Function

GO:

id name namespace
GO:0007252 I-kappaB phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008384 IkappaB kinase activity molecular_function

KEGG:

id description
K04467 IKBKA, IKKA, CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176111 lncRNA upstream 318438 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 415708 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 601855 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 629311 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 641550 8920468 ~ 8920730 (+) True G139997
TU176280 lncRNA downstream 155013 9730648 ~ 9730863 (+) True G140156
TU176316 lncRNA downstream 191451 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 206299 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 212112 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 269249 9844884 ~ 9853426 (+) False AMCG00003019
AMCG00003002 mRNA upstream 53983 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00002997 mRNA upstream 237139 9316731 ~ 9325141 (+) True AMCG00002997
AMCG00002998 mRNA upstream 245647 9300311 ~ 9316633 (+) False AMCG00002998
AMCG00002995 mRNA upstream 289122 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00002996 mRNA upstream 318181 9236740 ~ 9244099 (+) True AMCG00002996
AMCG00003009 mRNA downstream 3964 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003007 mRNA downstream 54177 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003018 mRNA downstream 166803 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003019 mRNA downstream 269141 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003020 mRNA downstream 325632 9901267 ~ 9920544 (+) True AMCG00003020
TU176137 other upstream 231816 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 257440 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1518060 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1635448 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 2182793 7376687 ~ 7379487 (+) True G139720
TU176317 other downstream 202615 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1179266 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1633938 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1910556 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2798331 12373966 ~ 12374360 (+) False AMCG00003129

Expression Profile