RNA id: AMCG00003009


Basic Information

Item Value
RNA id AMCG00003009
length 825
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00003009
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9579599 ~ 9583885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGATGGCTCATGTTGGGGCAGTAGTGGCCGCAGTAACTGGGGTGATGGCAATCCTGCTGCACTCCTCCATCCACAAGATCGAAGAGGGGCATCTGGCTGTTTATTATAGAGGTGGTGCTTTGCTGACAGCTCCCAATGGACCAGGCTATCATATCATGTTGCCCTTTATTACTACCTTCAGAAGTGTCCAGacaaCACTTCAGactgatgaaataaaaaatgtgcctTGTGGGACAAGCGGGGGTGTCATGATCTATTTTGACAGAATTGAGGTGGTCAATATGTTGGTCCCAACTGcagTGGTTGACATTGTAAGGAACTACACTGCCGATTATGACAAAACGCTGATCTTTAACAAGATTCATCACGAACTGAATCAGTTTTGCAGCGTTCACACACTCCAAGAGGTATACATCGAATTGTTCGATATAATCGATGAAAACCTGAAGCTGGCCCTGCAAAAAGACCTCATTGCCATGGCGCCTGGTCTTACAATTcagGCAGTACGTGTTACAAAGCCCAAAATCCCAGAAGCTATCAGAAGGAACTTTGAACTAATGGAGGCGGAGAAGACCCGGCTGCTCATTACTGCCCAGACACAGAAGGTAGTGGAGAAAGAGGCAGAAACGGAAAGGAAAAAAGCCATCATAGAGGCACAGAAACTTGCACAAGTGGCTGAAATTAATTTTAGGCAGAAGGTGATGGAAAAGGAAACGGAGAAGAAGATTTCTGAAATCGAAGATTCGGCGTTCCTGGCGAGAGAGAGGGCCAGAGCAGACGCAGAATTCTACACAGCGGAAAAATTCGCTGAAGCAAACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176111 lncRNA upstream 335757 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 433027 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 619174 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 646630 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 658869 8920468 ~ 8920730 (+) True G139997
TU176280 lncRNA downstream 146763 9730648 ~ 9730863 (+) True G140156
TU176316 lncRNA downstream 183201 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 198049 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 203862 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 260999 9844884 ~ 9853426 (+) False AMCG00003019
AMCG00003008 mRNA upstream 3964 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003002 mRNA upstream 71302 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00002997 mRNA upstream 254458 9316731 ~ 9325141 (+) True AMCG00002997
AMCG00002998 mRNA upstream 262966 9300311 ~ 9316633 (+) False AMCG00002998
AMCG00002995 mRNA upstream 306441 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00003007 mRNA downstream 45927 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003018 mRNA downstream 158553 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003019 mRNA downstream 260891 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003020 mRNA downstream 317382 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003023 mRNA downstream 339796 9923681 ~ 9926024 (+) True AMCG00003023
TU176137 other upstream 249135 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 274759 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1535379 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1652767 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 2200112 7376687 ~ 7379487 (+) True G139720
TU176317 other downstream 194365 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1171016 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1625688 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1902306 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2790081 12373966 ~ 12374360 (+) False AMCG00003129

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12505469_12509093.mRNA True 1237 mRNA 0.47 11 CI01000012 12505469 ~ 12509316 (+)