RNA id: AMCG00003013


Basic Information

Item Value
RNA id AMCG00003013
length 876
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00003013
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9736172 ~ 9739250 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGTTTTGCAGAACTGCAGCCTTTCTGCTAAGACCAGCGAAAGCCTTGCCTTACACATTGACCGCTGCTCGAAGTTGCAGCTCGGgtgGCCAGTACCAGTATATCTTAGTGGAAAAGAAGGGTGCAAATCAGAATGTAGGTTTCATCCAGTTAAATCGCCCCAAAGCCTTGAATGCCCTCTGTGATGGTCTGATGACTGAGATGGGTCAGGCTTTAGATGCTTTTGAATCCGATAGCCAAGTTGGTGCCATAGTGATCACAGGCAGTGAGAAAGCATTCGCAGCTGGAGCAGACATTAAAGAGATGCAAAACCGAACCTTTCAAGAGTGCTACGGTGGCAACTTCCTTGCCCACTGGAACAGGGTTTCAACGGTTAAGAAGCCAGTCATAGCAGCTGTGAATGGATTTGCACTTGGTGGAGGATGTGAGCTGGCAATGATGTGTGACATTATCTACGCTGGGGAGAAGGCACAGTTTGGGCAGCCAGAAATCCTTCTGGGCACAATACCTGGTGCTGGAGGAACTCAGAGACTAACGAGAGCTGTAGGGAAGTCGTTGGCAATGGAAATGGTTCTCACGGGTGACAGAATTTCGGCTCAGGAAGCAAAAGCATCAGgcCTTGTAAGTAAAGTATATCCCACTGCTCAGCTAGTAGAGGAAGCAATCAAATGTGGAGAGAAAATTGCTGGGAACTCGAAGCTCGTCTCCTCAATGGCCAAAGAGGCTGTCAATGCAGcCTATGAACTGTCATTAGCCGAAGGAAATCGATTGGAGAAGAGATTATTCCATTCAACCTTTGCCACAGCTGATCGTAAGGAAGGAATGACAGCATTTGTTGAAAAGAGAAAAGCCATCTTTGAGGACAAATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K07511 ECHS1; enoyl-CoA hydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176247 lncRNA downstream 128856 9596943 ~ 9607316 (-) True AMCG00003017
TU176248 lncRNA downstream 128856 9601208 ~ 9607316 (-) False AMCG00003017
TU176214 lncRNA downstream 195619 9540344 ~ 9540553 (-) True G140093
TU176115 lncRNA downstream 493185 9237868 ~ 9242987 (-) True G140016
TU176112 lncRNA downstream 499870 9236022 ~ 9236302 (-) True G140014
TU176301 lncRNA upstream 1404 9740654 ~ 9740940 (-) True G140174
TU176327 lncRNA upstream 26403 9765653 ~ 9771507 (-) True G140199
TU176347 lncRNA upstream 109645 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA upstream 109645 9848895 ~ 9853413 (-) False G140217
TU176363 lncRNA upstream 149908 9889158 ~ 9889626 (-) True G140228
AMCG00003014 mRNA downstream 7532 9701635 ~ 9728640 (-) True AMCG00003014
AMCG00003016 mRNA downstream 97956 9637791 ~ 9638216 (-) True AMCG00003016
AMCG00003010 mRNA downstream 106486 9621880 ~ 9629686 (-) True AMCG00003010
AMCG00003012 mRNA downstream 115132 9607782 ~ 9621040 (-) True AMCG00003012
AMCG00003017 mRNA downstream 128957 9600773 ~ 9607215 (-) False AMCG00003017
AMCG00003015 mRNA upstream 7079 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003011 mRNA upstream 11935 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003021 mRNA upstream 23646 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003022 mRNA upstream 52597 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003029 mRNA upstream 196161 9935411 ~ 9941910 (-) True AMCG00003029
TU176114 other downstream 498442 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 888332 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1241576 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1797931 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2383351 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 562550 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1901566 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1954756 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 3111771 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 3111771 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile