RNA id: AMCG00003015


Basic Information

Item Value
RNA id AMCG00003015
length 1074
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00003015
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9746329 ~ 9750513 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATGAAGTATGAAAGCGTGTATAAAAAGATGTGACCAGAGctaatattaaaaatgagaCTGCACGCATTGTTGTGTAGTGCTAAACAATTCAGAGATGTTTTCGATTTCGGCGGCCGAGAAATTGCGCATTGGTTCCCTGGTCACATGGCGAAAGGTCTCAAACAGATGAAAGCCAACCTGAGAAATGTGGACTGTATCATAGAAATCCATGATGCCAGAATATCCTTTaacgTTCTTAAACAGCTGGCTAAGCAAGGTGTGAAGAATGTTGTGTTTACAGACTGCTTACGGCAAAAAGATGAAAATGTGAAGAAGGTAGTTCCTATGGTAACTGAGCTTATTAAGAGCAGCTCTCGATTCCACAGGACGGAGCAGGgtaaAGCTTCCAGAGTTGGGGGAGAACCAGGCATAACCAGAGCAGTTTTAACTAAAATCCAGGTCTGTGAAAGGCCTCTTGTGTATTTGCTAGACACGCCTGGAGTCCTTCCCCCAAGGATAGAAAATATAGAAACTGGAATGAAGTTGGCGCTATGTGGAACTATACTGGACCATTTAGTTGGTGAAGATGTAATTGCTGATTACTTACTGTATACTTTAAACAGGCTAGAGAAATTCAGCTATGTTGATAAGTATGAGCTGGAAGAACCATCTGATGACATTCAGCACATCCTAAAAAGAATTGCTGTGAAGCTGGGAAAAACACAGAGAGTGAAAGCTATCACTGGTGTAGGCGAAGTCACCCTCACCGTGCCAAACTACACGGCTGCTGCTTATGATTTCATCCGAGCTTTCAGGAAAGGAGAGCTTGGCAGGGTGATGATGGACTGATCAACATACCTACAGAACAAGGTTACACTGGAGTGTCTAAGACTGTACATGTCCAAGGTCacttgcatatatttattttgatgggAAGGCACAAAGGATTTCCCAGAGAAATGGGATACGTGTCCCACAATGAACCTTTATTTTTGCAGTAGCACTTTTGCTCCTGAGTTTgtaaaatatcattattttaaatataatgtcaTAATATATTTCTGCTCTTTGTAATTAAATCGCAGTGCACAG

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K19828 MTG1; mitochondrial GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176301 lncRNA downstream 5389 9740654 ~ 9740940 (-) True G140174
TU176247 lncRNA downstream 139013 9596943 ~ 9607316 (-) True AMCG00003017
TU176248 lncRNA downstream 139013 9601208 ~ 9607316 (-) False AMCG00003017
TU176214 lncRNA downstream 205776 9540344 ~ 9540553 (-) True G140093
TU176115 lncRNA downstream 503342 9237868 ~ 9242987 (-) True G140016
TU176327 lncRNA upstream 15140 9765653 ~ 9771507 (-) True G140199
TU176347 lncRNA upstream 98382 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA upstream 98382 9848895 ~ 9853413 (-) False G140217
TU176363 lncRNA upstream 138645 9889158 ~ 9889626 (-) True G140228
TU176422 lncRNA upstream 285665 10036178 ~ 10037857 (-) True G140279
AMCG00003013 mRNA downstream 7079 9736172 ~ 9739250 (-) True AMCG00003013
AMCG00003014 mRNA downstream 17689 9701635 ~ 9728640 (-) True AMCG00003014
AMCG00003016 mRNA downstream 108113 9637791 ~ 9638216 (-) True AMCG00003016
AMCG00003010 mRNA downstream 116643 9621880 ~ 9629686 (-) True AMCG00003010
AMCG00003012 mRNA downstream 125289 9607782 ~ 9621040 (-) True AMCG00003012
AMCG00003011 mRNA upstream 672 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003021 mRNA upstream 12383 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003022 mRNA upstream 41334 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003029 mRNA upstream 184898 9935411 ~ 9941910 (-) True AMCG00003029
AMCG00003028 mRNA upstream 191543 9942056 ~ 9945940 (-) True AMCG00003028
TU176114 other downstream 508599 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 898489 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1251733 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1808088 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2393508 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 551287 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1890303 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1943493 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 3100508 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 3100508 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile