RNA id: AMCG00003016


Basic Information

Item Value
RNA id AMCG00003016
length 426
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00003016
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9637791 ~ 9638216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCCTTACTCTCGCATCATGAATCCTGTCCAGGGGTCTCTCTCCCAAGAGATGAAGCCGCAAGCAAGAGACGAGCCGGAGAAGGAAGATCTCCCGTCAAAAGATCAGACACAGGCCACCAAAGGATGTAAAAGCAAGATCTCCAGCCTCCCTTTTAGCGTCGAATCGCTGATCTCGGACCGGGCGACTTGCAGGACTCAGTTTTCCTCCACCGACCCGAGTTTGGTGCCTCCTAAAGCGGTGGCAGAGGCGCCCAAAGCCAGCTCTCCAAGGACTCATTACGCAGAGAAGAGTATCTCCGGGGAGAGCTTGCCAAACTTGAGAGACTGTCCGAAAACCGAAAGCGAAGACGTGAATGACAACGAGCAGAGCACTTGGTTTCAATCTTCAGCTTACTCAACTCCTCCAAGTAAGTGGCTTTGA

Function

GO:

id name namespace
GO:0043049 otic placode formation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176247 lncRNA downstream 30475 9596943 ~ 9607316 (-) True AMCG00003017
TU176248 lncRNA downstream 30475 9601208 ~ 9607316 (-) False AMCG00003017
TU176214 lncRNA downstream 97238 9540344 ~ 9540553 (-) True G140093
TU176115 lncRNA downstream 394804 9237868 ~ 9242987 (-) True G140016
TU176112 lncRNA downstream 401489 9236022 ~ 9236302 (-) True G140014
TU176301 lncRNA upstream 102438 9740654 ~ 9740940 (-) True G140174
TU176327 lncRNA upstream 127437 9765653 ~ 9771507 (-) True G140199
TU176347 lncRNA upstream 210679 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA upstream 210679 9848895 ~ 9853413 (-) False G140217
TU176363 lncRNA upstream 250942 9889158 ~ 9889626 (-) True G140228
AMCG00003010 mRNA downstream 8105 9621880 ~ 9629686 (-) True AMCG00003010
AMCG00003012 mRNA downstream 16751 9607782 ~ 9621040 (-) True AMCG00003012
AMCG00003017 mRNA downstream 30576 9600773 ~ 9607215 (-) False AMCG00003017
AMCG00003005 mRNA downstream 83124 9545998 ~ 9554667 (-) True AMCG00003005
AMCG00003004 mRNA downstream 112898 9501245 ~ 9524893 (-) True AMCG00003004
AMCG00003014 mRNA upstream 63419 9701635 ~ 9728640 (-) True AMCG00003014
AMCG00003013 mRNA upstream 97956 9736172 ~ 9739250 (-) True AMCG00003013
AMCG00003015 mRNA upstream 108113 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003011 mRNA upstream 112969 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003021 mRNA upstream 124680 9762896 ~ 9773347 (-) True AMCG00003021
TU176114 other downstream 400061 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 789951 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1143195 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1699550 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2284970 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 663584 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 2002600 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 2055790 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 3212805 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 3212805 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile