RNA id: TU176344


Basic Information

Item Value
RNA id TU176344
length 3545
lncRNA type sense_over
GC content 0.34
exon number 4
gene id AMCG00003019
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9844776 ~ 9853453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGGAGTCTTGTTGTGTGAAACCTGCTAAGCCACCCACCATGGATCTCAAAGTTATTGCAGTGGTGACTCTGCTGATGGTGACCATGTGCATTCATGTATCACACGCGAAGCCCTTCAGCCTGGGGGAGCGATGCTGGTGCCGATCTTCGGAGAACACCGTTCCCAAGAGCAGCATCAAGCAGCTGAAATTCCTCAACACCCCCAACTGCCCCTTTCAAGTCATTGccacactgaaaaacaacaaagaagtGTGTATTAACCCTCAAACTCTATGGCTGCAGCAATATTTAAAGAATGCTCTTAACAAGTAAGGAGAAACACTTCTTGACAAaattaaaaaaagtagaAGACAAGGCAATTGAGGACCTGTACAGGATTACAGCGACTTTGCCAGCCGACCATGCAGACATGTAACATATGTACTCTTTTCTGGACTGCTTGCTGTAACAGCACTTAATTGCCAAACATCCTTTGTCAGCATTAAATCTGTCCGTGGATCACTGCCACTCGTATTGACACTACTCTTATAAgtgcaattataaatatatttgtatatgtataattttatacAGACTTTTTAATAAGATGTAGTTAACAGAGGTGTTTGGAGTTTTGCTCTTGGAATTCTACCATGCAGTATCAAGAGGGGGTTTTCAGGCCTTTAACTCTTTGCTCAAGAAAGCGTAAAATGATCACCCATCATCTGAATGGATTCTAATCCACCACCTTTATTTTGAAAGGGAAACACTGTTAATGTTTTCATCACGTACCTTTAGTACTGCAGCAATGAATGACTATATCAAAATCTACAGACAGCATAGTCCATGTTTTAATTATCCACGCAAAAGAGTATTAGCATTACCCTTAAACTTGTGAACCCTTGCCCCTCTGAATTGCtttagtatttttaatgaatgtaataaaatgttcataaagGGGCAAGAAACTGCCAAAAGGGACAATATCAGTGGaattattatacagttataGATTTCTATCTGACAGGTGACATTATTTAGGTCTTTCAATTAACAATTAGGTATGCTTTGATGTAGTGGGAGCCTATTGTGCCACATCAAATTAAGAAGGGCCAGTACTGAGACAGCATAATATGCTACGGGGCATTAAAAAGAGTGTTTTGTATGAGAATACAGGCAAGATAGTTTCGTTGTATACATTAACAGATGTTTCTTCCTTTTCAGAATACAttactcaaaaataaaaaccaaagcaGAGGGGATAAATCTTGATTTAAGCTGAAACCAAAATATGAACAACatattcattttccatttccattagaattatacacacatttttacccCAACAAGTAAAGTGatagaattattttatatttaaatgtcagcATTGAAGCAGCTGAACAGTAGAATTAGTAGCAGTaggagtagtagtagtggtagtagctgttgtaattgttttctcCAATATAATGCACTTTATACAAATAGATATTAACTTAAAATTAAGATCACTGGGGTAAATATGATAATTCAACAGAAAACAGTTTGAGGATGATATAAAAATACCCAAACCATTTTCTCCCTACATTTTATACCGTAGTAGCAGACATTAGTAATTGACATTTTATGCCACAGtgtatttccaaattaattacatattttttaagcagttgccaaaacattttaaaagcacattttgttttctactcattacattttatatggaGCAGTagagattaattaaatttatttttgtaattgtcttgtgtttttcataaatattttgttgttcatATGGCAGTACAATATGAAGGTTTTCCCAGAATGTACTAGACTACAGTGTTTCCTTATAGAtgtgtgttacatttttattgtctgtTTCATAGGAatctttaagaaaaataataatgtgctgtccaaaaacacattattcatGAACTATCTTTGTGAAAGTATGTCTTGtgaaatgtaaactgtaaaccattaaaaaaaaaaaaaactcagacgAGATTACATtccataaatgttttaataattacattaggCATAATCTGATAAACAACTGTCACGTGAATCATGGCTCTAAATTACgtatcattttaataatcttaAGACATTTAACTTTTGGTCTTCAGAAATGATAATATTGATATTTCCATATAAAATACTAGTTTCTGATGTGTTGTGGGACCCAAGTTCAGCCACAGAAATGACAGTGCTCTGTTATTACAATCATGTAATATCTAAATATGTAGCACTATTTAACAGTAATTAACAAAAAGCTAACTGACTTTTCCCCAGATACCACAAATTGAGGTGATGGGTGGTGCTGTATAAACAGCTTCTGCATGATGAATGGATGAACTATAACTGTATTCTGTCATATTTGTCAGACATTAGGAATCTTTTCAAACTGTCAAGCATCTGTGTATCAGATGTGTGCCAAAAGTAGTTTAGCATTCCAAATTCTTATTATAACAATctgaacacaaacatttcaggagaAGTTCAATGCCAGACTAAGGCCAGAAGGCCACGTGGGTTGATAGAaccctgaaaaaaataatcttgtaattatgttttttcagtaaatactttttcttacatttttactttgctATAATGCTTTCGTTTTCTTTTTGCCTTGCTTATGTAAACTGTGGTGTTCCAGTCCGATTCAGTGAATCAGACAACTGTTTATCAGAAGCGCAGCCTGCAGGCACATAGatcagagagaaacacagggaTTTTAGAGAGGTATTTAGATGGGATTTGATCACTGTATGAGAATGGTGCTCTGCTCAGCTTCACACCACATAACGAGAAACTGAAATCAATGAAACTAACAAAACGGCATTTTTGCAAAAGTTTATAAATTCTGTGATTCTTTAGAATAATGATAAACAGAGATCTATTAGGCTCAGAGCATTTTTCATTCGCTTCCCTAATGACAAGAAACAGTCTCTGCATGGTGAATTGTTTATGCACTAGTTAAAAAGccaaatatatgtgtgtgctaCATCTGGATCGCGCTATTAAAATCATATCAAAATGTTCCACTTTTTTGGCAAGAAAAGTGTACATAAGCCATGCAGGACGTTGACCATGAGATTAAGTAAATATGTTGTCATCATACATCAGGATCACTTGACCAAAACATAAACAGGCCAGCAATATGACCATAGGCATTGTAATGAAAACTTAGACTGAGAGGCAAATATCATATTCTGAAGGGGATTTTATTACCTggcacctttttttttaacaaatattgaTAACAGTTATTGTTGCCACAGTGAGTTTTCAATGCAAAGATGATTGTTTTACTGTATATCATTTGTTCAATATTGATGAATGCTTATGTGCTTATATTTCTCCCACACAATGTGAAGAAAACTGTAACTCTTTTATGGCAGCTTACTCTATACGTATACTACatctttgatgttttgtttagctttttaacCATCACTGTTCGTATACAGACAAGCATTAATACTTTTGTTTCAATTCACTTTGtaatttttcaataaaatgttaaaagaatactgttgtttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176320 lncRNA upstream 56815 9787747 ~ 9788069 (+) True G140192
TU176318 lncRNA upstream 59092 9781934 ~ 9785792 (+) True G140190
TU176316 lncRNA upstream 71819 9767086 ~ 9773065 (+) True G140188
TU176280 lncRNA upstream 114021 9730648 ~ 9730863 (+) True G140156
TU176111 lncRNA upstream 601042 9243131 ~ 9243842 (+) False AMCG00002996
TU176356 lncRNA downstream 85430 9938856 ~ 9960116 (+) True G140223
TU176389 lncRNA downstream 125806 9979232 ~ 9979445 (+) True G140250
TU176400 lncRNA downstream 149406 10002832 ~ 10003519 (+) True G140260
TU176403 lncRNA downstream 164552 10017978 ~ 10018198 (+) True G140263
TU176404 lncRNA downstream 165179 10018605 ~ 10018823 (+) True G140264
AMCG00003018 mRNA upstream 102045 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003007 mRNA upstream 211526 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003009 mRNA upstream 260999 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003008 mRNA upstream 269249 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003002 mRNA upstream 336587 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00003020 mRNA downstream 47841 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003023 mRNA downstream 70255 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003024 mRNA downstream 76013 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003026 mRNA downstream 112530 9965956 ~ 9976662 (+) True AMCG00003026
AMCG00003025 mRNA downstream 143140 9996566 ~ 9997258 (+) True AMCG00003025
TU176317 other upstream 64432 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 514420 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 540044 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1800664 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1918052 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 901475 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1356147 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1632765 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2520540 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2877305 12730731 ~ 12739767 (+) True G140939

Expression Profile