RNA id: AMCG00003023



Basic Information


Item Value
RNA id AMCG00003023
length 1167
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00003023
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9923681 ~ 9926024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCGCCCCGGTGCCTGTGGCTCTGCGCTCTGCTCACAGCGCTGGCGCAGCCCGCGGCGCCGCTCCGGACCGGGGAGGAGGTGTCCCGGGCCATCCGGAGACTGCAGGACATCTTCGACATGGGGGACGTGGCTCCAAACAACCCCCCTCACAGGAAGGCACCGCAGTTCATGCTGGAGTTGTTCAATGCGGTGGCCGACTCCCACGGCCGGACCAAGGAGCCGGGGCTGCTGCAGGGCAACGTCGTGCGCAGTTTTGAAGATAAAGGGCATCCCGAGCGCACCTATCACTCCTTCAACCTGTCGTCCTTCGGGAAAGAGGAGATGATGATCAAAGCGGAACTTCGGATATTTAGACACAAGCAAGCTCTGTCTGAAAAATCTTTTGGACACCATTTTTATAAAGTTGATATTTATGTGTTACTGGACAGCGGATTGAAGCCCTGGAGTGGGAACCTGATTGCGTCCAGATTATTGCCCCTGTACACCCAAGGGTGGGAAGTGTTTAATGTCACACAGACGGTTTCAAAATGGATTCAGGACAGCGACTCGAATCATGGCTTTCTGGTCGTCACCGCACTGCCCTCTGGGAATTCGCTGGACTCCAGCATGGTCCAGGTGGACAGAGGTCAAAAGCAGCGTGATGGGAAACACGCTTTCTTGGTTATTTTCTCGGATGACGCTAGAAGGGGATCAAAACCAAATCTCTCACATTTTCCAGGTCCGAAAGCTGCACCTAAAGCTGTTGCAGCCCCGGTCTTGGCCCAGGGTGGAAGTGTACCTCCTTCAGACAAGGAGCACAGAAGGAGAAAAGTCCGTTCTGCTCCATATTACATTGAAGGCCGTCGGACATCATGCAAAAGGTTTCCTCTGTATGTGGACTTTGAGGAGATTGGATGGTCAGGGTGGATCATCTCACCACGGGGTTACAACGCTTACCACTGCAAGGGCGCTTGCCCTTTCCCACTTGGAGAAGGCTTAAGAGCTACCAACCATGCTACTGTGCAGTCCATTGTTTATGCTCTGAAGCTGTCGAAAGAGGTGGAGACCCCTTGCTGTGTACCAGACAAACTACACTCCATTAACCTTCTGTATTTTGATGATGAAGAAAATGTAGTCCTTAAACAGTATGACGATATGGTCGCGGTTAGCTGTGGCTGTCATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176343 lncRNA upstream 70255 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA upstream 70255 9844884 ~ 9853426 (+) False AMCG00003019
TU176320 lncRNA upstream 135612 9787747 ~ 9788069 (+) True G140192
TU176318 lncRNA upstream 137889 9781934 ~ 9785792 (+) True G140190
TU176316 lncRNA upstream 150616 9767086 ~ 9773065 (+) True G140188
TU176356 lncRNA downstream 12832 9938856 ~ 9960116 (+) True G140223
TU176389 lncRNA downstream 53208 9979232 ~ 9979445 (+) True G140250
TU176400 lncRNA downstream 76808 10002832 ~ 10003519 (+) True G140260
TU176403 lncRNA downstream 91954 10017978 ~ 10018198 (+) True G140263
TU176404 lncRNA downstream 92581 10018605 ~ 10018823 (+) True G140264
AMCG00003020 mRNA upstream 3137 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003019 mRNA upstream 70228 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003018 mRNA upstream 180842 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003007 mRNA upstream 290323 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003009 mRNA upstream 339796 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003024 mRNA downstream 3415 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003026 mRNA downstream 39932 9965956 ~ 9976662 (+) True AMCG00003026
AMCG00003025 mRNA downstream 70542 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003032 mRNA downstream 107900 10033924 ~ 10038457 (+) True AMCG00003032
AMCG00003033 mRNA downstream 120713 10046737 ~ 10048774 (+) True AMCG00003033
TU176317 other upstream 143229 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 593217 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 618841 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1879461 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1996849 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 828877 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1283549 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1560167 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2447942 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2804707 12730731 ~ 12739767 (+) True G140939

Expression Profile