RNA id: AMCG00003024


Basic Information

Item Value
RNA id AMCG00003024
length 2689
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00003024
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9929439 ~ 9937381 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgactttgcCGGTAACACActcagcagcagtagcagcttGCATCTTCCCAAAGGCTATCACCTCGGTTCTGGTTCATTTCCAGGAAACAAATAGATTTAAAGCAGATCGTCCAAAAAAGTTTTGCCAcaggacacagcaatgttttaCTTTCATTGTCCTCCGCAATTAGATGGGGAATGCTGTAGGACTAATACTTTGAATAGCAGCGGTTTTGGAAATCACTCTACAGGGGACTTTGATGATGGTTTTCTACGAAGGAAACAACGCAGAAATAGAACAACGTTTACATTACAGCAGTTGGAAGCGTTGGAAGCAGTTTTCGCTCAGACTCATTATCCAGATGTTTTCACCAGAGAAGAGCtggcaatgaaaataaacctgACGGAAGCCCGCGTCCAGGTGTGGTTCCAGAACCGGCGAGCCAAGTGGAGAAAAACGGAAAGAGGCAGCTCGGACCAAGAGGGGAGCAAAGAGCCGCTGAGCGACGGGACGCCGCCTGTGCGCAACTTGAGCTCCCCGTCCCCCATTGACCAGGGCAGGAGCAAAAAGGAGCCGCTGGAAATGCAACAGAGtATTAACAGGACCGTTGGTCCCGGTGGCCCGTTTTTCCCGTCCTGTCTGCCCGGGACTCTGCTCAACACCGCCACTTACGCGCAGGCGTTGTCTCAAGTTGCAACTCTGAAGGGGAGTCCTCTCTGCTCTTGCTGTGTGCCGGACCCCATGGGCCTTTCCTTCCTCCCCACGTACGGATGCCAGAGTAACCGGACAGCCAGCGTGGCAGCCCTGCGCATGAAGGCCCGGGAACACTCGGAGGCCGTGCTCCAGTCTGCCAACCTCCTCACCACCAGTGGCAGCAGTCCCAGCCCCACAGCCAAACCGTCCACACAGGAAAGCAGCCCGGACAAGGCAAACCGCTCCAAGGAACAGCtcgaaaagaaaagaaacttgtGAGAGATCCGTGCTGCTCACTGTGCATCAGGACAGACAGGCGGACTCGGTGCACCCGGAATTGCAAACAGAATGGGTTTTGAGCCTTTGCTTTAACACACTCATCTCGTCTTTCTCCTGAATTTCAAGAAAACTCACCTGAAGatcagttttttcttcttccaaatgagactatttatttatttatttatgtatgtatttatttatgaaatgacTAGTTCTGTTTCTGTATGTGCATATGTTCAAAGTGCTTTTCACAGTAAAATAATCTCTGTTAATGGTAAGCAAAATTATTGTGATACAAAACACTAATTGGAAACAAGGGGGTCTCATGATTGTTTTGGTAAAGAGTGTTCATTTTCCCAgtatgttcatttatttgtaattctgTGTTTAGACATCTGCATCCTGTAAGTGAAACAGATTCTGATGTCATGAAGGAAATGAAGAGTTTCTGTATCCCTGGTTATCAGCAAGACCAGTTCTGTATCAGTAGTTACTCTACTTCCataatgacatttgttttgcgTTAATCTGTAGGTATTTACAGAGAAAATgggcaaatatatattttgctttcagCTGATTATCATTAATAGATTTTACTCAGTTTTAGAAAATGGATTATGCATTTATATGTGTCAAGAAGGCTTAACACTAGAAATGGATCTCTTTTCTGTCACTTTTAGACTGTTATGTTCTATAAATGAAGGATAGTTGTTCTGGTAtgtttgtgggtttgttttaatttcacaactGTGCTTTACATTTGGTTTCTGCTCATTATAAATATACTATGTACCATCAGTTCCACCTCACATTTTCAGCTGACCATACTTTACTCCTGTACTGAcgtgttttaaaacaattaaagatgtAGGCGTTTATGTACATCTCCTGTAGCCTATTGCTTGGGCCATCTGGCtctgattaattattaatttacttctCTGTATACCTAGAGGAAAAACTGTGAGAAAGAAGCAATGGTGGGTCTTATCCTTATTTACTTTTAGAAACATCaccatttttcaaatttgatactctaccacttttttttttcctatcttATAAAAGTATAGCTTTAGTTTTTCAgttgtaatttttgtattatcttgGTCCTCTTGAACTCCGGTCTTGCCTATATTCCTTGATTCTGTCTGATTAAATtcttatggttttttttttttctttcttacagaAAGGCACATAAATAAGAGAACGGTTGAGCAAATTAAGAATACTTAACAGCATTGCATATGAAAAGTAGTTAGGCTGATTAAATTTTGTGTCCTTGAGGATTTTCGGGAAATTACTTTTGATCGTCAATAACACAATTAAGTAAACTACACGCACATTAGCATGAATAATTGATAAGAAATTATGTATTACGACGAAGTACTGATTTAATAATTCATGATGCGACACCCTGGTGACTCCTCAGAACCAGATAACGTCAAAGGTCTTTCCTGATACAACTGGGCACACTGTGCACTTGCAGACTGTATGGTTTGACTGtgtcttaaaaataatagtaaaaataataatagtaattattataataatgtggcACATGCATGATTTTATgttcaaattatattaataaaattaaggACTCGTTTAAATCAGTTGGTCTTTATTTGTCTTGAAGGACAGGCATCTGCTGTTATGTGTATTGTAATTGTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24895 DRGX, PRRXL1; dorsal root ganglia homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176343 lncRNA upstream 76013 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA upstream 76013 9844884 ~ 9853426 (+) False AMCG00003019
TU176320 lncRNA upstream 141370 9787747 ~ 9788069 (+) True G140192
TU176318 lncRNA upstream 143647 9781934 ~ 9785792 (+) True G140190
TU176316 lncRNA upstream 156374 9767086 ~ 9773065 (+) True G140188
TU176356 lncRNA downstream 1475 9938856 ~ 9960116 (+) True G140223
TU176389 lncRNA downstream 41851 9979232 ~ 9979445 (+) True G140250
TU176400 lncRNA downstream 65451 10002832 ~ 10003519 (+) True G140260
TU176403 lncRNA downstream 80597 10017978 ~ 10018198 (+) True G140263
TU176404 lncRNA downstream 81224 10018605 ~ 10018823 (+) True G140264
AMCG00003023 mRNA upstream 3415 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003020 mRNA upstream 8895 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003019 mRNA upstream 75986 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003018 mRNA upstream 186600 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003007 mRNA upstream 296081 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003026 mRNA downstream 28575 9965956 ~ 9976662 (+) True AMCG00003026
AMCG00003025 mRNA downstream 59185 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003032 mRNA downstream 96543 10033924 ~ 10038457 (+) True AMCG00003032
AMCG00003033 mRNA downstream 109356 10046737 ~ 10048774 (+) True AMCG00003033
AMCG00003031 mRNA downstream 130740 10068121 ~ 10077255 (+) True AMCG00003031
TU176317 other upstream 148987 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 598975 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 624599 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1885219 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2002607 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 817520 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1272192 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1548810 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2436585 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2793350 12730731 ~ 12739767 (+) True G140939

Expression Profile