RNA id: AMCG00003026


Basic Information

Item Value
RNA id AMCG00003026
length 1667
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00003026
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9965956 ~ 9976662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaaagccCAACTGGCTGCGTTTCATGTAGGTCCAGCTGGAAATCTGTGTAGGTTCCAACTACTGCACAGGAAATGACATTTCCTACATTTTGCAGGAGAGGAGTGATTAAGGAGGGAGGGTGTTTCTAACTGGGAACAGAACAAGTACTGTTTCATATTacaaaaacgaaaaaaaaaaaaaagaaaaagaaaaatcctggGACTCCTTTCGTTAAGACGTTTAGCTGAGTTTATGGAGCCTGTGTgcctgaaaaatgaaaatctccTCAGTGGTCATAGTTCTCCTGACTAGAGTTTTAATTGGAGaagtGTGTGAGGCCCTGAATGTGACGGTCTCCCCTGGACCAGTCATAGTGTCGGCCGAGGGTGAAAATGTCACTCTCTCCTGCGATATCTCTCAGAAGAAGAAACCCAACAGTCTCTTAGTTGTCCGCTGGGTGTTCTCTCTTGTATCGGACACAGAGCATCTGATTGTCAAAATGAATATGAGACGAGTGCAGATGTACGGGAATTACACAACACGCTTCAACCAACAAAAGCTCAAGTTCGTTGAAGTAACAGAGGGCAAAACCTTTGATTTAATCATTCTGAACATTTCCAGAGAAGACAAAGGTCATTATATATGTAAAGTCCAGGAAATCAGAAAGCACCGGAATAGATGGCGAGCCTCTTCCAATGGCACAGCAACTACAGAACTAAGAGTGCACGTTTTACCAGCTGTGAAGAGCAATGCTGGAATATGGCGTCTTTTTGAAGACGTGTacctctgtgctgtgctgataTGCTCTATCGGTATTATATGCATGTTTCTGTTCACGGTAATCCTCATCTGCCAATGCCTGCACAAAAAACGAAGATTAAAAGCAAGTTATTATTTGGTCAAATGTCCACAGAACAGCTCAGGAGAGACTGTAACTAGTGTTGTTAGCTCATCGCCTATGCtgccaaagaaacaaaagaaatacaaacggaaaaaatataaagaaaatgctgATGTTCCACCTGAAATACCAGCaaaagTTCCCATTGCCGATACGCCCAGAAGGCCCAGACTTCTAAAAGCACAACCAAGGAAAGTGGTGCTGCCCAAAATTGCAGAAGAAAGCTTAACGTATGCAGAATTGGAGCTTGTTAAGACCCAACCAGAGAGCAAAGCAGTTTGCACAGGCACCGTCTATGCACAAATCCTGTTCGAAGAGAGACAactgtaaatatacacataccATTATGGGATTCAAaccattaatttatataaaatctattttattgtttttaattacatttatgtatgtattttactgatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtgtatatatatgtgttccttgttttctattttattttgtaacaattacTTTATTGGAAGAATAATGCtctgaaagaataaaacaagatcctattttttttttttaatccgaTGTCAAATGTTTGCATGTATGCATTATAAGActcctgacttttttttttaaccaaaggAATGAAGGATAACTATTCAATTTTTATCTTAATTGCATGTAATGTAAAActgtgatttataatttattcagtttaaaatattttcttttttttgttttaatccttcTGTGATGAAAGGAATGACCTAATGCAAACAGAAAATCTACATAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176356 lncRNA upstream 5840 9938856 ~ 9960116 (+) True G140223
TU176343 lncRNA upstream 112530 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA upstream 112530 9844884 ~ 9853426 (+) False AMCG00003019
TU176320 lncRNA upstream 177887 9787747 ~ 9788069 (+) True G140192
TU176318 lncRNA upstream 180164 9781934 ~ 9785792 (+) True G140190
TU176389 lncRNA downstream 2570 9979232 ~ 9979445 (+) True G140250
TU176400 lncRNA downstream 26170 10002832 ~ 10003519 (+) True G140260
TU176403 lncRNA downstream 41316 10017978 ~ 10018198 (+) True G140263
TU176404 lncRNA downstream 41943 10018605 ~ 10018823 (+) True G140264
TU176405 lncRNA downstream 42753 10019415 ~ 10019619 (+) True G140265
AMCG00003024 mRNA upstream 28575 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003023 mRNA upstream 39932 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003020 mRNA upstream 45412 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003019 mRNA upstream 112503 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003018 mRNA upstream 223117 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003025 mRNA downstream 19904 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003032 mRNA downstream 57262 10033924 ~ 10038457 (+) True AMCG00003032
AMCG00003033 mRNA downstream 70075 10046737 ~ 10048774 (+) True AMCG00003033
AMCG00003031 mRNA downstream 91459 10068121 ~ 10077255 (+) True AMCG00003031
AMCG00003034 mRNA downstream 121797 10098459 ~ 10128943 (+) True AMCG00003034
TU176317 other upstream 185504 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 635492 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 661116 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1921736 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2039124 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 778239 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1232911 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1509529 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2397304 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2754069 12730731 ~ 12739767 (+) True G140939

Expression Profile