RNA id: AMCG00003028


Basic Information

Item Value
RNA id AMCG00003028
length 3885
RNA type mRNA
GC content 0.45
exon number 1
gene id AMCG00003028
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9942056 ~ 9945940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGGCACTACAAATACACGGATGGCTTCAGTGACAGGTCGAGTGCTGGGAGTTTCATGGATGAAACAGACAGAGAAGTCAGTAATCTCACGGACCGTGCATTTAGGAGCTTGTGCATTGGGGAAGAGGCCATTTATAACGACTCTgatttctcttcctctccccctgAGCGTCACAGGACTTTTATCGAGGATAACCAAAACCATGAAATCCTGAAAAGGACTGCTCAGGAAAGGTTTTCTCTGAGTGTGAAGAGGTGTGCAGAGGTGGAGAGGAACGCAGAAGGTGCTGCAACATTCCAGCAGTCAGTCATAAACCGGTCAGCGCAAGAGCACTTATTCAAAAGTGATGCTGCCTCACAGTTGAGCAATGGTGCTATTGGAACAGCCTGGCAGcaagaaaacaatgcatcaaGGGTTTCTTCACTCATTAAGGCATTTAATATTGCAGAGAATGAGTTCAGCATAACTCCTGATAGCATGCAGGATGTTCTAGCAGCAACGAAAAATGATCGTGTGCACAAGGAAAACCACAGTGAATCGTGGGACAAATCAGCCCTTTTGAGTATTCAGAAGGAATTATCCGAATTCTCTGATGCTTATCATCAGAATTTTATGTCATGTAAAAAGTCTGTTGCACCTGATAGCTGGAAGAAAGCAAATCATTTAGCCCCATCAAGAAACAATTTTCATTCTTCTGAAGTTGCAGCTACCCAGAAGTCGAATATGGACTGTTCCCTTCCTTCCAAAAACCCCTCAAAAACAAAAGGTAGCAAATCCAGTAgaggaaagaaactaaactcCAGGAACTCTTTCCTTCATAGTGAATTCAGCCCATTCCAATCATGGAAGGATTACATTAGGTTCCCATTTGAGAGAGAAGAGGTAGCAGACATTTTGCCCACAGTGGAAGTCCCCAAATGGTACGATTCCCCTCTCTACAAGGAGTTGACAGCAGAACACAGGATTCAGACGCCCCCGACTGtggaaaagaaaccaaacagaaaacaagttgTTGAAGTCATCCCGGCCAACCAGCCTTCCGCTACAGTCATGCAAAAAGCCTTGgccctggaaaagagatgcgAGTCTGAGATGGCAGCTAACTGCCCCCCTTGGAGAAGAAATAGAGACCTGATTAAAAACAAGCCTGCCCTGCAACGACCCTGTACCGTTTCGCCTTTGAGTGGGAAACCTCGAGGAAAGGACGAAGGACTGCTGTCTGTCAGTAAGGCAACACCGATCCATCATAAAGTGTGCACAGTGCTGGACGAGCAGACGTCTAACATTACAACTCCTTCGTTCAACATTTCCAAGCTGCTGACACCTGTTATCCATGCCAGACAAGAAACAGAGACATCTGAAATCCTGCAGTATGCACTTTCTCCTCCAGCCATTGATCTTACAGCATTAGGTGAATCTGAGGTCAGAACCCTGCCTGAGAACAAATTACGGGACAACTATAAAGCTATGGCTTCCAGTCTGCTATTTAACCTTAAAGATAACAGAAAACGCGTAAAAAGCAAGTACAGCCCCACGACATTTAAAAGCCAGGAGGTTCTAGATCGCAGTAAACAGCCCTCCAAGCAAGAGGTTGTCTCCAAAACTATACCAATGATTTCAGAAATTCCTGCAGCAGGGGTCAGTTCATCTGGGCAACCAAAAGCAAAAGATGTCCCATCTGTTACCAGCCCTGTCTTGCGAACAATCAACAAGCAAACTGCAGATCATAAAAATGATGCTGATGCTCGTATCTCAGATGACTACTTGACATTAATTTCACCTCAAACTGTAGAAGAGGCTGCTAATTATAAGTGCTTCAATAATGTAATACAGGAAAGTGCAGTAAGCAAAGATCAGTCTGCTGAAAGCGAAAGTGGTAAATACAGCGGCTCACAAATGACGCCTTGTCCCAGATCGAACGAGATCATGCCGAGAAAGAGACCAGAATACCCTTCACTGAAACTgtataagaaagaaaatactttggAGGAAGAAATTAAAGAGACACTGCCGGTAGTTACAAAGCCTCGGCAGTCTGCTGAACTAAGAGAAGGAGACAATGCTAGAAAGCAAACTGGACGCCAAAATGTGAATGGTTTGCACAGTTCGTTGCCAACACCTAGTTTACCCTTGCAGGACAATGGTATCAGACAGAATCATGCTTTTCATAGCGAAACAAGTAAGGGAAATGTGTCGACAAAATCTTCCAAGGAAGCGTATTTGTTGGTAGAAGAAGCCAGTGAGCAAAACGGCCTGGATCGAGATGTGAAAGCAGAATCTACATTGTTGAATTTAGATGTTACGGAAGAAAAGAGTGAGGTTACTAAGGTAGTGTCTGAGGAGGTGAAGAAAGAGCTGGAGAAAGTAGAATTGGAGTATTACGCTCTAAGTAATCATGAAGGTGAGAGTGAAAGTAAAGACAGATTAGGGGCATCTCCTCAAAGAGAGGAGAGCACGCCTTGGAAAGAAGTAACTGAAACGTCTCCTAGTGGATTAGAAGCAGGTGGGTGGGTGCACTGTTTAATAGATTATGCTCAGGCCAACACACCAGTGCCAATATCAACTGTTTCTTCTCCATCGTTAGCAAAGCTGAACATGTTTAAGATTAAAGATAACACCTTCAAGACTTCCCCTGTAATCAAAGCAGTCAAACCACCTTTGCATAAAGCATTGCCAGAGGAAACGGCTCCCAAGGAGAATTTCAGTGGGTCTGAGAAAGCAGAGTCTGAACAGGATCAGGTCAGTGAACGCAGTGACAATCCCACTGTAAACGAGATTCCTGTCTTGAATGAGACGCCACTGCCAGAGGAAATCCCAGCTCCAGAAGTGGCACCGTCTGCAGAGGAGGTCCCAGCTACAGACGCATTGGAGAATATCCTTGAAAGTAATTCAGTGCCggaaagagaagaaagtcaTGTGATTGTGACCACCGTGTCAGAGGAAGTCGAATGTGGTGCTGCAAATACAGCAGACGCCGAGAAGAAGGTGGCAGCTTCTGTTAACGCAGAAGAAACGGAAGGCTCCAAAGATGTTAGTGAAAGGTCAGATTCAGTCTGTAGTgctaatgaaaacaaaccactcGGCAAACCGCCAGCCGTCCCACCgaaaactgaaaaagcactTCGACGTGCCAAGAAGCTTACAAACAGAAGGAAAAAGGTTGATCTCAAACCTAAAGTAGAAAGTACTAGCAAAATCGAAAAGAAACCCATGCGTACAGTTTCTAGTGTACCGTCATCCCCAACCCGTCTGTTGTCATCACCTCTCCCTGTAAGCATCGCACCGTCAACCAGTCTTGTGCACCTCGAGCCCAGTTTTGTCCCGTCAGCCCCAAATATTGTCGCACTGAATGGAGCGCAGCCCATACAGCCCTTCCCTCTCACCCAGAGAAAGCTTTTGCAGGACCCTGAGTCAGGTCAATATTTTGTGGTTGATATGCCTGTACAGgtcaaaacaaagacattttttgATCCTGAAACAGGGAAATATGTCCAGTTGTCCATTCGCTCAGCAGAAGGCGGCTTATCACACGCGTCATCGTTGGAGGTCTTGAATCCTCCTTACATGCTGTACCCTGGGTTTTTACCACTCCCTGTGACATCGCTCCCAACTTTGAGATCTTCGTCCCAGATGTCCGCCCCAGCTGCTCTCATGGATGATCAAGAAAAGGTGGAACTTTCTGAGTCCTGGATGCAGGATATGATTAAACAGAATTACAACAGAGAGAGCCAGCCATACATTGAGCCGGCGTATGAGTCTCATAATCAGATTACAGAGGAATCATTGTACAGCGAAGGAAAAGAAAGTGTCAGCCCAAGGAACTTAGACATTATATCAATGAGCGAACTGGAAGATTTTGCTGTTGAAAGCATCTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176363 lncRNA downstream 52430 9889158 ~ 9889626 (-) True G140228
TU176347 lncRNA downstream 88643 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA downstream 88643 9848895 ~ 9853413 (-) False G140217
TU176327 lncRNA downstream 170549 9765653 ~ 9771507 (-) True G140199
TU176301 lncRNA downstream 201116 9740654 ~ 9740940 (-) True G140174
TU176422 lncRNA upstream 90238 10036178 ~ 10037857 (-) True G140279
TU176545 lncRNA upstream 275840 10221780 ~ 10339260 (-) True G140368
TU176655 lncRNA upstream 676666 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 707385 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 872829 10818769 ~ 10819159 (-) True G140521
AMCG00003029 mRNA downstream 146 9935411 ~ 9941910 (-) True AMCG00003029
AMCG00003022 mRNA downstream 149787 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003021 mRNA downstream 168709 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003011 mRNA downstream 183854 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003015 mRNA downstream 191543 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003027 mRNA upstream 35270 9981210 ~ 10032434 (-) True AMCG00003027
AMCG00003041 mRNA upstream 133915 10079855 ~ 10091736 (-) True AMCG00003041
AMCG00003037 mRNA upstream 182392 10128332 ~ 10134010 (-) True AMCG00003037
AMCG00003039 mRNA upstream 239666 10185606 ~ 10190625 (-) True AMCG00003039
AMCG00003040 mRNA upstream 288592 10234532 ~ 10246632 (-) True AMCG00003040
TU176114 other downstream 704326 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1094216 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1447460 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2003815 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2589235 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 355860 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1694876 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1748066 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2905081 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2905081 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile