RNA id: AMCG00003029


Basic Information

Item Value
RNA id AMCG00003029
length 255
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00003029
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9935411 ~ 9941910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTCGGTTTGCCTTGTCCGGGCTGCTTTCCTGTGTGGACGGTTTGGCTGTGGGGCTGGGACTGCTGCCACTGGTGGTGAGGAGGTTGGCAGACTGGAGCACGGCCTCCGAGTGTTCCCGGGCCTTCATGCGCAGGGCTGCCACGCTGGCTGTCCGGTTACTCTGGCATCCGTACGTGGGGAGGAAGGAAAGGCCCATGGGGTCCGGCACACAGCAAGAGCAGAGAGGACTCCCTGAGGAGACGGAGACGTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176363 lncRNA downstream 45785 9889158 ~ 9889626 (-) True G140228
TU176347 lncRNA downstream 81998 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA downstream 81998 9848895 ~ 9853413 (-) False G140217
TU176327 lncRNA downstream 163904 9765653 ~ 9771507 (-) True G140199
TU176301 lncRNA downstream 194471 9740654 ~ 9740940 (-) True G140174
TU176422 lncRNA upstream 94268 10036178 ~ 10037857 (-) True G140279
TU176545 lncRNA upstream 279870 10221780 ~ 10339260 (-) True G140368
TU176655 lncRNA upstream 680696 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 711415 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 876859 10818769 ~ 10819159 (-) True G140521
AMCG00003022 mRNA downstream 143142 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003021 mRNA downstream 162064 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003011 mRNA downstream 177209 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003015 mRNA downstream 184898 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003013 mRNA downstream 196161 9736172 ~ 9739250 (-) True AMCG00003013
AMCG00003028 mRNA upstream 146 9942056 ~ 9945940 (-) True AMCG00003028
AMCG00003027 mRNA upstream 39300 9981210 ~ 10032434 (-) True AMCG00003027
AMCG00003041 mRNA upstream 137945 10079855 ~ 10091736 (-) True AMCG00003041
AMCG00003037 mRNA upstream 186422 10128332 ~ 10134010 (-) True AMCG00003037
AMCG00003039 mRNA upstream 243696 10185606 ~ 10190625 (-) True AMCG00003039
TU176114 other downstream 697681 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1087571 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1440815 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1997170 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2582590 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 359890 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1698906 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1752096 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2909111 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2909111 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile