RNA id: AMCG00003032


Basic Information

Item Value
RNA id AMCG00003032
length 1677
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00003032
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10033924 ~ 10038457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATCCTTCCCCCGCATACGCCATATTTGAAGTCGCTCAAAGGGGAAACGTGGAGGAGTGCGAGAGGGTCGTCCAGCTGGACCGCTCTCTCCTGACACGCAGAGGTTGGAGTGGGTTCACCCCACTTCATTATGCTGCATTTCAGGGGAACAGGAAACTAAGCGAACTGTTCCTAAAAAATGGAGCTGACCCCAACATACCAAGTGATGCCGGGCAAACAGCTTTTCATCTTTCTTGTAGGCATGGTGACGTGTATGTAATCCATCTGATGCTGAAACATGGAGCAGATCTGAGCATTGTTGATCACCAGGGGAAAACAGCACTTCACCAGTCAGTCTCCGGGGGTAATATAATTGCTATAAGGTACATAGAGGATACTGGGGTCTTCAGTTTTTCGGACACAGATAAGTTTTTAGTCAATCCCCTGCACCTCGCGGTGTCAACTGGAAACATCGATGTCGTGAAGTACTTACTGAGaaacaatAGGTGTCAAGCACATGCTGCTGACAATCAGGGTATGACTGCCATGCATGTAGCGGCTGAGAGAGGAGCAATAGAAATAAGCTGGATATTGTTGCAGCAGTTTGGGTTTCAGctcctgcatttaaaaaacaagggtGGACTTACCCCAGTTGACCTTTGTAGGCAAGGAACAACATACAGACATAAACAACTTACAAAGATTTTATGTGACTTCATCAACCAACCAGTGGAGCAGAAACCTAAAGCTTCTTATGGCATGTACTACTGGGCCCTTCTGTTCCCTGCCATCAGTGGATCGATTGTCCTCCTGATTGCGGCAGTACTGGGAAAATACGGGGGGATATTTTGTGGGCTGGTATTCCCTTCACTGGCAAAGAGCATTTTCTCACAATATCACAGAATGAACAGCTACCAGAGGCTGCCAAATCCTATCTATCTTGGTACATTTGCAGCTGGCATATTTCATTCATTGCTGTGCTTCTTCCACAAGATCATGCCAAATATCCTTTGCAATAACATTTCCTTGACTCCAATACTTATTTCTCCTGTCAATGCATTGCTCCTGATGTCCGTCACCCACTTCACAGCGATGCTCTGGATGTTCCGTCTGGTTCTGACAAAAGATCCAGGGCGGTTACGAAGAGCTGACACTGACTCAAAGTTTACAACAATTGCCGAGCTTGTCGAAGCAAACCAGAACCCGTACAAGTTCTGCATTCATTGTGAGATGATCCAACCAGACAAATCCAGGCACTGTAAACTTTGCAACATCTGTGTACTTGAATATGACCACCACTGTCTTTTTCTAAACAACTGTGTGGCAAAGAATAACCATCGGATCTTCGTTATCTTCATAATGGAGTTAATAGTTGCACATGTGATCTTTATCGTGTCGGCACTTTATTACATATACCTGAAGTACAATCGGCCTTTCTTGACTGTGTGGACAACAGTTATTAGTGAAGAAGTGTGGGTGTTGGTTCTGACTGTAATGAACGCCTTTACACTGATTTGGGAAAGCTGGCTCCTTAAAGAACAGTTTGAAGCAATATCAATGGGCACCACTACATACTTCAAACAAAACTCTGACAGACGTTACTCCCGGAGCTTGCGATGCcgaacattttttatgtttctaattGAAGACAAAAGGAGACACGATTTCCAGCTAGAGAGATCTATAGACATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176409 lncRNA upstream 3401 10030226 ~ 10030523 (+) True G140269
TU176408 lncRNA upstream 8775 10024939 ~ 10025149 (+) True G140268
TU176406 lncRNA upstream 12467 10020824 ~ 10021457 (+) True G140266
TU176405 lncRNA upstream 14305 10019415 ~ 10019619 (+) True G140265
TU176404 lncRNA upstream 15101 10018605 ~ 10018823 (+) True G140264
TU176494 lncRNA downstream 196378 10234835 ~ 10237083 (+) True G140331
TU176503 lncRNA downstream 209378 10247835 ~ 10251525 (+) True G140340
TU176516 lncRNA downstream 249980 10288437 ~ 10289935 (+) True G140351
TU176623 lncRNA downstream 586306 10624763 ~ 10627882 (+) True G140434
TU176624 lncRNA downstream 593806 10632263 ~ 10632489 (+) True G140435
AMCG00003025 mRNA upstream 36666 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003026 mRNA upstream 57262 9965956 ~ 9976662 (+) True AMCG00003026
AMCG00003024 mRNA upstream 96543 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003023 mRNA upstream 107900 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003020 mRNA upstream 113380 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003033 mRNA downstream 8280 10046737 ~ 10048774 (+) True AMCG00003033
AMCG00003031 mRNA downstream 29664 10068121 ~ 10077255 (+) True AMCG00003031
AMCG00003034 mRNA downstream 60002 10098459 ~ 10128943 (+) True AMCG00003034
AMCG00003035 mRNA downstream 125626 10164083 ~ 10166896 (+) True AMCG00003035
AMCG00003036 mRNA downstream 131049 10169506 ~ 10171361 (+) True AMCG00003036
TU176317 other upstream 253472 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 703460 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 729084 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1989704 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2107092 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 716444 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1171116 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1447734 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2335509 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2692274 12730731 ~ 12739767 (+) True G140939

Expression Profile