RNA id: AMCG00003035



Basic Information


Item Value
RNA id AMCG00003035
length 1365
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00003035
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10164083 ~ 10166896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCAGTTCAATTCGTCTTACTTGCTCATCTAGTTTTCTTCCTGGGATACGCAAACTTCGCAACAACTGCAGCACAAGAGATGCCCAGACCTGCGCAGGAGAGCGGCGCTTCGGACCCGCCAGCGGATCACCCGGCTGACAGTTCAGCACCTGACAGCTCAGCTCAGGACATGGTGGCCATTCACATGTTCAAACTGTATGAGAAGTATAACAGAGAAGTCAACCGACCAAGAGACGGGAACACCGTGAGGAGCTTCAAGGCAAGCCTGGCAATCTCAGAGCAGAAGGTTTTGTACCACTTCAATCTGACTTCTCTTCAGGAGTCAGAAGTTATTCTTGCTGCCACATTCCACTTCTTCTTTGACAAGCGCCCGCGACAGAAATTTTGGTTCTGCAAACGTTTCAAAAACCCATCTTGTCGCATCCAGCAACTTCACCAGCTGCCTTCACTGAACCTCATCTTCAGAAATGCTTCTTCAAGCGTTGCTTCTGGAACAGTGTTGGGAAACATCACCATTTTTCCAAACAGACGAGGATCCTGGCAGTCAAAGgatatatttcaaatgctcAAAGAAGCCAAGACAACAGATGAACTCTTACTAACAGCTGAATTCGATTTTGGTGAAAAATACCAAAAGTACCAAGATCACATTTCACCTTCCAGTCTTCCATACATCCTGGTGTATGCTAATGACTTGTCAATATCTGAACCCAACAGTGTCGCTGTGTCCTTGCAAAGGTATGACCCTTTCTCTGTCAATGAAGAGACTACCCAGTCCCCGAATTCTTCTCCTGATGGCCGAGTGAAGAGGGACACGCATTTCCCAGACCACATCCAGAACAATGAACTTCCTGAAGTAGAGTACAATACATTCAAGAAGCACGAGCTATGGGAAAGTGCGTATATGGCTCTGAAGCCCAAATCGCCCAAAAAAGACCGCAGGAGAAAAGGGCAGGAGAACAGTGATGGAATAACCAAGTCCCAGGTCCTCAGCTTTGATGAGAAAACCATGAAAAAAGCCCGGCGAAGGCAGTGGAATGAGCCACGCATCTGCTCTAGAAGATACCTGAAAGTGGACTTTGCAGATATCGGCTGGAGTGAGTGGATTTTATCCCCAAAGTCATTTGATGCCTACTACTGTGCAGGCACCTGTGAATTCCCAATGCCCAAGGTGGTTCGCCCCTCTAATCATGCAACCATTCAGAGCATTGTGAAGGCAGTGGGTATTATTCCAGGAGTCCCTGAGCCCTGCTGTGTCCCAGACAAAATGAATTCTCTCAGTGTCCTTTTCTTGGACGAGAATAAAAACGTGGTGTTAAAGATTTACCCCAACATGTCTGTGGAGTCCTGCGCATGTCGATAG

Function


GO: NA

KEGG:

id description
K22674 GDF10, BMP3B; growth differentiation factor 10

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176409 lncRNA upstream 133560 10030226 ~ 10030523 (+) True G140269
TU176408 lncRNA upstream 138934 10024939 ~ 10025149 (+) True G140268
TU176406 lncRNA upstream 142626 10020824 ~ 10021457 (+) True G140266
TU176405 lncRNA upstream 144464 10019415 ~ 10019619 (+) True G140265
TU176404 lncRNA upstream 145260 10018605 ~ 10018823 (+) True G140264
TU176494 lncRNA downstream 67939 10234835 ~ 10237083 (+) True G140331
TU176503 lncRNA downstream 80939 10247835 ~ 10251525 (+) True G140340
TU176516 lncRNA downstream 121541 10288437 ~ 10289935 (+) True G140351
TU176623 lncRNA downstream 457867 10624763 ~ 10627882 (+) True G140434
TU176624 lncRNA downstream 465367 10632263 ~ 10632489 (+) True G140435
AMCG00003034 mRNA upstream 35140 10098459 ~ 10128943 (+) True AMCG00003034
AMCG00003031 mRNA upstream 86828 10068121 ~ 10077255 (+) True AMCG00003031
AMCG00003033 mRNA upstream 115309 10046737 ~ 10048774 (+) True AMCG00003033
AMCG00003032 mRNA upstream 125626 10033924 ~ 10038457 (+) True AMCG00003032
AMCG00003025 mRNA upstream 166825 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003036 mRNA downstream 2610 10169506 ~ 10171361 (+) True AMCG00003036
AMCG00003030 mRNA downstream 9746 10176642 ~ 10181642 (+) True AMCG00003030
AMCG00003043 mRNA downstream 28641 10195537 ~ 10226031 (+) True AMCG00003043
AMCG00003044 mRNA downstream 94444 10261340 ~ 10286055 (+) True AMCG00003044
AMCG00003045 mRNA downstream 119259 10286155 ~ 10288094 (+) True AMCG00003045
TU176317 other upstream 383631 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 833619 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 859243 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2119863 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2237251 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 588005 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1042677 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1319295 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2207070 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2563835 12730731 ~ 12739767 (+) True G140939

Expression Profile