RNA id: AMCG00003037


Basic Information

Item Value
RNA id AMCG00003037
length 2311
RNA type mRNA
GC content 0.36
exon number 8
gene id AMCG00003037
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10128332 ~ 10134010 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaacacacaagctgaGCAGCCAGCTGCAGCGCTACTAGATTGCCCTCTTGTACTGCAGCTCTGATTAAATTATCATTCCTTTTCAGAGCGTACAACAACCATATGTAAAGCATATGCTACAAAAGGATCTGACACTGATGAGGGAAGGAGAAAATGAGTGAACGATACCGAGTGATACAGCAAGCAGCGAGGATCAGCGGAGCGAAGTCTGAAGAATATGCAGACTTTCTGCTAGAACATGAGCGCAAATGTGGACCAGATGGATTTTTGGATTCCAAAAAATACAGGCACCCTTATTTAGTGAAGGGAGGTTTAGGACTGAATCTTCCATCAAAAAAGGGTTCGTCTTTATCAGGACAACAGCAGAAAGCAGTGGCTGATCGGTCATTCACAAGAGAATGGAACCCAAAGGAACATAAACACGGCATTGAATTTATAGAGaaatgtgttagCAGAGCTGAAGAAGCTGAGTTCAAGCTCTCCAGCAAGATGCATTCAGCGGAGTATAAATCAAAGAAGATGAAGACCCGGACCAATGATCTCCTGGCACAACTGGACAGACTCAGGAAGCAAAATTCAGACCAATTACTGAGGAATTGGGTGGCTGCTAAGAAGAGTGAAGAAGTCCTTACTTTGCAGCTGAGGAAAGAGATATCAGAACTACAGAAGTACGAGCGTGAGAAAGAAAGCTGCTATCAATCCTTAATCAAACACCGGGCTCTGCAAAAGGAGGATCAACACATTCTTGAAAACATGCAGAcggaaCACAGAAGAATGCttaatataagaaaaatatgaataattaacaaaacatcaagacaaaaaagcacaaataaaaacatgaatcatGTACTGGTGCTTATCCTCAAGGACATGCTGTAATTACCCATGGTGCTTTGCTAGAATAGGTCTGCCAATCATTCAATAGGTGCTACAAAATATCTTGTTGTTTTaaggcacatttttttttacctctcaAAAGGTCTGGTTAATTTGTTGGATATCTTTATTTCATAATCACCACTTGATTTAGCTCTCTAAAACCCTGTCAGATTATTGTTTTAGGGCAAAACAATATGTGAACAAAACATTCTCACTTTGAAGAAAAggtttaagatttaaaaatcaatttcttGCAGATCTATACTGATCTTTACATATCAAAGCATTCCAGATTGATTGTTGTAACATATtatttgctaaaataatatgaattgtaatgtaataaCATATATTGTGTTTGTCCTTGATTGAATATATTAAGTACTGGATGTATGTTATACCTGTTCTGCAAAATTACAAAGAATTgtaatgacagaaaaaaatgtattaggaatgcaaattaacaaaaatcaatacTGAATGGTTTCCTTCCTGTTACACAGTCCAGGCAAAAATGACTCAAAACACTCTGAAATCAATGTATATGATCAAACACTGTTCAAAAGCTAAGAGACGGAACCCAAGAAGATAAAGGCTTGCTCCCTGGTTAAAATCATACTGTACacttatatatacaattatttgttgTCCATAGTGTGGCAAACACTTaaagattagaaaaaaatatggatatatatctatatttcaacaacatatatgtacatacaaaTACTGCTTTTCGGAAAATGTGGAATAACTTATCGTGGAAAACATGTTTGAATGGCAAGAGTTTTCCTGTTGCTACTGGTTACCATGAAGAAGCAGGATGCTCTGCAGAACTTCCAGCCAGAGTCTGTAACAGAAGAGGTACTGTTCCTGGAAGCAGAGGGAATGGCAACTCCATTATTAAAGCACAGCCCATTAGTGGGGGACTGTCAGTCAGATTTATTAGGATCTATACATCATATTTCGGGAAAGGAAAATCAAACTTGTGCTATAGTAAAATAAGTAGAAATCCCCTAAGACAGTTAATTAAAGGATGTTTAAATTAGGAATTATGAGTTTCATTAGTAGTTAGTACGGAAATGACTTTGGTggtattcatttgaaaaatctGGCTCCACATACTCATAATTAGAGAGAAAGGCAGTGAAAACCCAttcaatattaatgtattttggctTCAAAATGGTTTCTTTTGCGTCTCTGTTCTTTGTTATGACTGATCCATATTTCACATGTTTCGTTTCAATTTTACCTTTGTCTGAATCATTCCATATCTCTGTTGTCTCATCTCCTTCACAATGTCACTCACATTTATctgtgaaggaaaataaaaacattaaaaatatatctatagaaacacacacaccctttttaattttttatctgTAGTCATACGTACACTTAAATCGTTTTCAATCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176422 lncRNA downstream 90475 10036178 ~ 10037857 (-) True G140279
TU176363 lncRNA downstream 238706 9889158 ~ 9889626 (-) True G140228
TU176347 lncRNA downstream 274919 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA downstream 274919 9848895 ~ 9853413 (-) False G140217
TU176327 lncRNA downstream 356825 9765653 ~ 9771507 (-) True G140199
TU176545 lncRNA upstream 87770 10221780 ~ 10339260 (-) True G140368
TU176655 lncRNA upstream 488596 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 519315 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 684759 10818769 ~ 10819159 (-) True G140521
TU176757 lncRNA upstream 792108 10926118 ~ 10929972 (-) True G140537
AMCG00003041 mRNA downstream 36596 10079855 ~ 10091736 (-) True AMCG00003041
AMCG00003027 mRNA downstream 95898 9981210 ~ 10032434 (-) True AMCG00003027
AMCG00003028 mRNA downstream 182392 9942056 ~ 9945940 (-) True AMCG00003028
AMCG00003029 mRNA downstream 186422 9935411 ~ 9941910 (-) True AMCG00003029
AMCG00003022 mRNA downstream 336063 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003039 mRNA upstream 51596 10185606 ~ 10190625 (-) True AMCG00003039
AMCG00003040 mRNA upstream 100522 10234532 ~ 10246632 (-) True AMCG00003040
AMCG00003038 mRNA upstream 113847 10247857 ~ 10262159 (-) True AMCG00003038
AMCG00003042 mRNA upstream 141696 10275706 ~ 10286026 (-) True AMCG00003042
AMCG00003047 mRNA upstream 154254 10288264 ~ 10292338 (-) True AMCG00003047
TU176114 other downstream 890602 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1280492 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1633736 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2190091 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2775511 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 167790 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1506806 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1559996 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2717011 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2717011 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile