RNA id: AMCG00003046


Basic Information

Item Value
RNA id AMCG00003046
length 2065
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00003046
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10318878 ~ 10323697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCAGCAGCTGCCCAGATCTGGCCACGCCTTCCACGGCTACGGATTGTGCGCGAAAAAGCCCCGCCCAGTTCCTCACACGTTGGTGGGCGGGGACTCGGCGTTCCTCCGCTCTGATTGGTCAGGACGCGCTTGCCGGAGAGAACGCAGAATAActttgtgtgtctgctgtggGTCGCTGCACTGACAGGGCTAGAGACGGAGGAGAAGTTGCTATAAAGGGGTCTAATTCATAGCTGTTATTTATATGAAAAGAGAAATCCCTTCGAGGTAATGCAGATTGCCATTAAATACGACTCTATATAACCTTGGAGAGCGTTACAGTCTGTTCTataaaaaaactcaaatctTCCTCCTTCGACATAGGGCTCGGTGCAGCAGTTCTGTGAGGAAGGCGAGAGACCGTGGCTGTGGGTCGTCCAGTGTGGGATGGACGCCCCCGCCGGCCCCTCCCGGTTTTGGAGACTGTCGGAGCGCCGTAGCCGAAAAGCCGCCTCCCCCAACATCTTCCGGGGCATCAACCTGCGCCAACTACAGCGCCTCTTCCGGCAGTCGGGGGACCAGCAGGCCGAGCAGCGGGCACAGCTAATATGGGGGCACTCTGATGAGGCGGAGCTGGCACAGGCGCTGATTGGGCTTAGGGGGAGGAGCCGTAGGAACCGGCTCAGGACAGAGGGCACTCGCGATGCCCTGGGACACAAGTGGCTCCATGCCTTTGGCCATCTAAGGATCAACGAAGGCCCTGCAAGAAAGAATAACGAAGAGGACGGGGAAGATTCAGTGAATGAATCGACCGACTCCATTAATGCTAACACAGCCACAGACAGTTCCTGTGCAGGGCAGGAGGATGTCACCCTCACTGATGACAGACCACCGGACCCAGAGAGGCTCCAGCTAGCCAGTTCTGTGTGGAGCCGAGGGGGGGCCATGAGGCAGGAAGGCGAGAGGGATCCTGAGAGATACCTCCATCGCATCCTACACTGACAGCGGGTGAAATGCAACGTCCGCACAATCACTGCTGGTGGATTTCCTCCAGTTTGTGTGcaagtgggagagggagagatagtcATGTAGTGGATGGTTCATAAAACACTATGTACCCAATGGTCTGTACTGTAATGAGTCATTGGTATATACTTCATGAAATTCTTATTCTTGATCAAAAACCAGCCTCATGACCTCCCAGTTTTCCTGTGTGCTACAGCTCCATACACCCCCAAAAACATAAATGAGGTCAATACATGTAAGACAGCagacaatacaaatgcatagtTTGATTCCTGAAACTATATTTTCAGGGGATATGAAGCTGCTATTTGAATATTTCACAAGTGTATTTAGCCTCAACCAGCATTAAGCTCATTTATTTCAGTCCGTGGACAAATAAAATTGAGTACTTTCTGCACACAGCTAGCAGACAACTATgagattaaaaatgtttgtcaaAATATTTTGTCGCTGGCATTCATGGTTGACTGCTCCCCTCTCCTCCAGTTATGCTTCTTTTAAAGGGAGAAATGTGCAATAGGTGTAGGTAGGACAAAAATTGTGAGGGGAACAGTAAGACTAAATCAACTGCTGATCAATGTCCAAGAATGATCTTCCAATACATGTgctgcaaatgtaaatgtataaacactagtgattgttttatttgtattttaaatggtcttAAAATAAGGACACATTCCTCTGAGTGGGCTGTAATGTTTggcttttatattaatttataaaaactgAACTTGAAAATCAACCTGGGATGTTCTCTGGGTACCCCAACATACAGGAGAGCTCCTATTTGATTAGAGTTTTCGTTATGGACTGACCAAATGCATTGATATGGGGCACATTACACTTGTAATGGTGTTGATTAGTTAGCCAGAGCATTCAACCACAGCCCAAAAAAGCCAGGCCAAGCCTCATCTATAAGCCttctttaaaagcaaagcaTGCACTTTAATCAGAAATAGAACTTGAAAAGCAAAATAGTTTTgagttcaaatgtatttacgATTTATAGCtggtatatgtatgttttgcaataaaaattattttgaaatccata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176422 lncRNA downstream 281021 10036178 ~ 10037857 (-) True G140279
TU176363 lncRNA downstream 429252 9889158 ~ 9889626 (-) True G140228
TU176347 lncRNA downstream 465465 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA downstream 465465 9848895 ~ 9853413 (-) False G140217
TU176327 lncRNA downstream 547371 9765653 ~ 9771507 (-) True G140199
TU176655 lncRNA upstream 298909 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 329628 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 495072 10818769 ~ 10819159 (-) True G140521
TU176757 lncRNA upstream 602421 10926118 ~ 10929972 (-) True G140537
TU176774 lncRNA upstream 641835 10965532 ~ 10967602 (-) True G140546
AMCG00003049 mRNA downstream 10905 10302263 ~ 10307973 (-) False AMCG00003049
AMCG00003048 mRNA downstream 18718 10293726 ~ 10300160 (-) True AMCG00003048
AMCG00003047 mRNA downstream 26540 10288264 ~ 10292338 (-) True AMCG00003047
AMCG00003042 mRNA downstream 32852 10275706 ~ 10286026 (-) True AMCG00003042
AMCG00003038 mRNA downstream 56719 10247857 ~ 10262159 (-) True AMCG00003038
AMCG00003052 mRNA upstream 96491 10420188 ~ 10445204 (-) True AMCG00003052
AMCG00003056 mRNA upstream 174505 10498202 ~ 10511429 (-) True AMCG00003056
AMCG00003054 mRNA upstream 194170 10517867 ~ 10519484 (-) True AMCG00003054
AMCG00003055 mRNA upstream 239556 10563253 ~ 10570538 (-) True AMCG00003055
AMCG00003063 mRNA upstream 250935 10574632 ~ 10578103 (-) True AMCG00003063
TU176114 other downstream 1081148 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1471038 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1824282 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2380637 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2966057 7348811 ~ 7352821 (-) True AMCG00002945
TU177068 other upstream 1317119 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1370309 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2527324 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2527324 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 2527324 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile