RNA id: AMCG00003060


Basic Information

Item Value
RNA id AMCG00003060
length 2010
RNA type mRNA
GC content 0.57
exon number 15
gene id AMCG00003060
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10581393 ~ 10600651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCTTTGGCCCTTGCTACTCCTGCTGGACCTGCCTGGCCTGTCCTGTAGCCAGCGCTCAGAGCCCATGTTTATGGCAGTCACCAAGACTGTGCTGCCCCCGGACTATGACAACAACCCCACGCAACTCAATTACGGAATGGCTGTGACTGATGTGGACGGGGACGGGGACctggaggtggtggtggtaggCGGTGACAATCGGGCAGGTCCGTCAGAAACAGTTTCCTGGGGGATGGAGGCTGAAAGGCTGAGCCTGGACCGCAGCCCCACAGTCACTGTCCTCGGGGCCCCCTCCTGGCAGGCAGCAGGGCCAGGACAGCGGAACGGCCGCATGCCAGAAAGGAGGATGTACAATGGTCCAAACCTTGTTCTGAAGTATGACCGAAGCAAGAAGGTTCTCTATAACATTGCTGTGGACGACCGGGATTCCCCCTTTTATGCCCTACGCGACCGCCAAGGCAACGCCATCGGAACTCTGTTTTTTCCCATGCAAGGTTTGGCAACATACTCTGACAAGCTTTTCAAGTTCCGCAACGGCCGCTTTGAGGATCTACTGAGTGATGACATCAACGTGCGCAGAGACGTGGCAAATCGCATGGCTGGGCGCTCAGTTGCCTGTGTGGACAGAAAGGGAACTGGACGGTACTCCATTTACATTGCCAACTATGCCAGTGGGAATGTGGGCTCCCACTCTCTGATTGAGATGGATGAAACTGCTAGTGACCTCACTACAGGGGTCATCGCTCTGTCAGATGTGGCTAGTGAAGCCGGAGTCAACAAGTTCACAGGGGGGCGTGGTGTAGTGGTGGGACCAATCGTCAGCAAGACGCGGTCAGACATCTTCTGTGACAACGAGTATGGGGCCAACTTCCTGTTCAAGAACAATGGGGATGGGACCTTCACGGACGTGGCAGCCCAGGCAGGTGTTGAGGACTCCTCGCAGCACGGACGGGGAGTCGCTCTGGCTGATTTCAATCGGGACGGGAAGACAGATATAGTGTACGGCAACTGGAATGGCCCACACCGCCTCTTCCTGCAGACCAACACCAATCGGAAGCAGAGATTCAAGgaCATTGCCACCCAGAAATTTGCCATGCCCTCTCCAGTTCGCACGGTCATTGTGGCCGACTTTGACAATGACAATGAGCTTGAGGTCTTCTTCAACAACATTGCCTACCGAGGGCCTTCGGCCAACAGGGTCTTCAGGGTCTCTCGGAGGGAGCACGCTGACCCCCTTATTGAGGAGGTCAACGTAGGAGACGCAGCAGAACCCGAGGGCCGCGGGACGGGGGCTGTAGTGACTGATTTTGATGGGGATGGGCGCCTGGACCTGCTGGTGTCCCATGGGGAGAGTGCAGCTCAGCCCCTCTCTGTCTTTAAAGTCAACCCGGGCTCTAACAATAACTGGCTGCGTGTGATCCCTCGCACGCAGTTTGGAGCCTTTGCACGGGGAGCCAAGGTAGTGGCATATACGAGAAGGAGTGGCCCGCACACGCGTATCATCGATGGGGGCTCGGGGTACCTGTGTGAGATGGAGCCCGTCGCCCACTTTGGAGTCGGGAAGGATGTGGTGACCAGAGTGGAAGTGTATTGGCCGGATGGGCACTCAGTGGCACGCCCCCTAGAGGCAGGTGAAATGAATTCTTTACTGGAGATCTCCTACCCAAAGGCTGAGGTGGAAGGGACACAGCCCACAGAGATTGAGTGTGGAAACGGATTTATTGCCAATGAAAACGGTCGCTGTACAGACAAAGATGAATGCACCCAGTTCCCCTCTGTGTGCCCCCGCGATCGCCCGGTCTGCATCAACACCTACGGAGCCTTCAAGTGCCGCTCCAACAAGAGGTGTGGCCAGGGGTTTGAGCCCAGTGAGGATGGTACCGCCTGTGTGGCTCAAATCGCTTACTTTGGGGGGAATCATGCTTCCTCCTCTTCCAGGCTCTCTGCCCAGCTCTCCCAGTTCTCTCTTGCTCTGTTGGGGTTCGCAGTCTGGCTCCAGGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176545 lncRNA downstream 242133 10221780 ~ 10339260 (-) True G140368
TU176422 lncRNA downstream 543536 10036178 ~ 10037857 (-) True G140279
TU176363 lncRNA downstream 691767 9889158 ~ 9889626 (-) True G140228
TU176347 lncRNA downstream 727980 9848895 ~ 9853413 (-) True G140217
TU176655 lncRNA upstream 21955 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 52674 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 218118 10818769 ~ 10819159 (-) True G140521
TU176757 lncRNA upstream 325467 10926118 ~ 10929972 (-) True G140537
TU176774 lncRNA upstream 364881 10965532 ~ 10967602 (-) True G140546
AMCG00003063 mRNA downstream 3290 10574632 ~ 10578103 (-) True AMCG00003063
AMCG00003055 mRNA downstream 10855 10563253 ~ 10570538 (-) True AMCG00003055
AMCG00003054 mRNA downstream 61909 10517867 ~ 10519484 (-) True AMCG00003054
AMCG00003056 mRNA downstream 69964 10498202 ~ 10511429 (-) True AMCG00003056
AMCG00003052 mRNA downstream 136189 10420188 ~ 10445204 (-) True AMCG00003052
AMCG00003059 mRNA upstream 24309 10624960 ~ 10647910 (-) True AMCG00003059
AMCG00003062 mRNA upstream 56410 10657061 ~ 10662103 (-) True AMCG00003062
AMCG00003061 mRNA upstream 69854 10670505 ~ 10679832 (-) True AMCG00003061
AMCG00003067 mRNA upstream 93941 10694592 ~ 10700613 (-) True AMCG00003067
AMCG00003068 mRNA upstream 130291 10730942 ~ 10743690 (-) True AMCG00003068
TU176570 other downstream 250021 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1343663 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1733553 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2086797 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2643152 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 1040165 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1093355 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2250370 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2250370 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 2250370 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile