RNA id: AMCG00003061


Basic Information

Item Value
RNA id AMCG00003061
length 2971
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00003061
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10670505 ~ 10679832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGACTAGCAGAGGCAGAGGGGAGgacggagagactgaggactATGTTGATCTGGGAAAGGAGCTGTTATGGCTGCAGGGTGGTGGGGCCGCACAAGGAAAGCAGCCCTTTGCTGTGGGACACTCACAAGGGGATGGCACACAGCAGTGCCCAAGACAAAGTATGACGCTGTGGTGATTGGAGGAGgACATAATGGACTGGTAGCTGCTGCCTATCTGCAGAAAGGGGGTGTGAAGACGGCGGTGCTGGAGCGCAGGCATGTGATTGGTGGAGCTGCCGTAACTGAGGAGATTGTTCCAGGATTTCGCTTCTCCAGGGCCTCCTACCTGCTCAGCCTGCTCAGACCTCACATCTACAAGGACTTGGAGCTGAAGAAGCACGGCCTGAAGGTGTATCTACGGGACCCACATGCTTTCACCCCCCTGCTGGAAGAGGGAGTTGGGGGGCGACCCCCGCGGTCACTGCTGCTGGGTGGAGACATGTCAGAGAACCTCAGACAGATCAGCGTGTTCTCTGAAAGGGACGCTAAGGCCTACCCTGCCTATCAAGCCTACATGGAGAAGCTGGCCAGTGCCATTGATCCTCTGTTGGACGCCCCCCCAGTCAACATCCCTGGGATGACTCAAGGGTCACTGAGGAAGAGACTAGCAGCCCTTTGGACGCTGAGACCACTGCTGCAGACTGGTTTAAAACTTGGTAAGAATATTCCGGATTTCTATGAACTTCTCACAGCACCGATAACAAAAATCCTTAATCGGTGGTTTGAGTCGGAGCCCCTGAAAGCCACTCTGGCCACAGATGCGGTCATTGGTGCCATGACGAGCCCCGATGCCCCTGGCAGCGGGTGAGAGTTATCCTTCCTGTCAGCTGGCACTGCAGCTCTGTGGTGCTGGTGGCTTTAATTGCATTCAGTCATGAGTTAACTGACCATGTCTTTTCAGTTTAGTCTGAGATATTGTAAGAGTTGCTACTCATCTGCAGTTAGCTGCAGTAATCTATGTCAAACAGTGTGGTTTTACCTGAATATTAAGCTTCTTTAACGGTCATGCTGAAGTGATTATATCTGTGTatgtccgtgtgtccctgcaggtACGTGCTCCTGCACCACGTGATgggagaggtggagggggagagaggcgCCTGGGGGTATGCCGAGGGGGGGATGGGTGGCGTCTCACAGGCCATTGCCAACTCTGCCCAGGCCCATGGAGCCTCCATCTTCACTGAGCAGGCTGTAGAGCGGGTTTTGATTGGTAAGGATGGGTCCGCTAAGGGAGTTGTCCTGAAAGGCGGCATAGAGATCCACAGTAAAGTAGTTCTGTCCAACGCCACCCCACACGTCACCTTCAGAGACCTCACCCCACAGGACTCTCTACCTCCAGATTTTATTAAAGCTGTCTCTCAGATTGACTATGCCTCTCCCGTCACCAAGATAAATGTTGCTGTGAACAGGCTCCCCAGTTTCCTAGCTGCCCCCAATTCTCCAGATGGGAGACCAGGCCCACACCACCAGTGCTCCATCCACCTGAACTGTGAGAGTACTGAGGTGTTAGAGCAGGCTTACCAGCAAGCCACACAGGGACATCCTTCTACCAGACCCATGCTGGAGGTTTGTATCCCCTCAGTACTGGATCCCACTCTGGCGCCCCCTGGCTGCCATGTGGTGTCCATTTTCAGTCAGTTCACCCCCTATTGGCTGGAGGGAGGCCGGGCCTGGGGGGAAGAGGACCGTGAGAGATATGCTGACTCAGTGTTTGGATGGATTGAGCGCTATGCCCCTGGATTCAAGAGCTCTGTCGTGGGCAAAGAGGTGCTGACACCCCCTGACCTGGAGAGGATATTTGGGCTGACAGGAGggaaTATTTTTCATGGAGCAATGTCATTGGACCAGCTCTACCTAGCAAGACCTTTGCCCGCCTTCTCTAACTATCGTTCACCAATCAAAGGGCTGTATCTGTGCGGGAGTGGAGCCCACCCAGGTGGAGGTGTGATGGGCTCAGCAGGGTGGAATGCAGCCCTGGCTGTTCTTGATGACCTGCAGAGAGGCTGATATGAAGGCTGGGTGGGGGTGGGCACTGGACATGGCCTTGCAATCACACAGCACCCCGACTGGATCCTCCCTCTGCTGAGCAAAACATATAAAGTCCATAGGTTCTTCATTCAGTGTTTGGGACCAGCCCCAGGGCTCCATAACTCAAACAAGCAAGAGACTTCATTAAAGATCATTTACTTCAGCCAATGGACATTTGCTCTTGGTGGAACTgaaaactaaaattatatatcaaataatgaatatgtGACAAACTGATAAGCAGCTATTACTTCGGTGTTAACAAGCAGttgtgaaataaagaaagaataaaagcTCACATTATCAGTCAGTACACTCTACACATATAGGTTTGTTAACCTTGAGATGGAGGGTCAATGCCTTGCACAGTGTGTGTTAAAGGGCATCAACATGGCAACCAAAAACAGGCAAGAGGAACAGTATGGTGGGCCCcgggaagaaaaaataaaaatctataaaacagTACTTCTTTCTTACACACTTCAATGGTTTATACAATGTCTCACATTTATGTAACTGTTACAGTAtagataaaatacattaaaaaccgTTTTCTCTCATACTGAGCTTACTGTGACTGAATAATTCATTTATTAACATGGTCACGATCATAAACACTCCACAGAACACGGACTTCTGATGCcaatgagagaaaataaacgAGAGCATCAGCGGCTGCAGATGAGGCGCTGGGCAACCCAAGTCATCACACAGCCCGTGGTGCGCAAGGTACAACAATAAAAACGAGAAAAGCGCTTTCACAAGATTATTCGTTCAACAGCTCATGCATTATAATATAGGACTTCCGTCCGTTAGCCTTCCTGCACTTCAGGGTCGCAAATAAGAAAAAACCCACCGTGTGGTCGTATACAGTGCTTGTTTGTCTACCCCTCCGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176659 lncRNA downstream 13508 10653325 ~ 10656997 (-) True G140458
TU176655 lncRNA downstream 46763 10622606 ~ 10623742 (-) True G140456
TU176545 lncRNA downstream 331245 10221780 ~ 10339260 (-) True G140368
TU176422 lncRNA downstream 632648 10036178 ~ 10037857 (-) True G140279
TU176363 lncRNA downstream 780879 9889158 ~ 9889626 (-) True G140228
TU176739 lncRNA upstream 138937 10818769 ~ 10819159 (-) True G140521
TU176757 lncRNA upstream 246286 10926118 ~ 10929972 (-) True G140537
TU176774 lncRNA upstream 285700 10965532 ~ 10967602 (-) True G140546
TU176798 lncRNA upstream 331306 11011138 ~ 11037311 (-) True G140567
TU176821 lncRNA upstream 427564 11107396 ~ 11107604 (-) True G140588
AMCG00003062 mRNA downstream 8402 10657061 ~ 10662103 (-) True AMCG00003062
AMCG00003059 mRNA downstream 22595 10624960 ~ 10647910 (-) True AMCG00003059
AMCG00003060 mRNA downstream 69854 10581393 ~ 10600651 (-) True AMCG00003060
AMCG00003063 mRNA downstream 92402 10574632 ~ 10578103 (-) True AMCG00003063
AMCG00003055 mRNA downstream 99967 10563253 ~ 10570538 (-) True AMCG00003055
AMCG00003067 mRNA upstream 14760 10694592 ~ 10700613 (-) True AMCG00003067
AMCG00003068 mRNA upstream 51110 10730942 ~ 10743690 (-) True AMCG00003068
AMCG00003069 mRNA upstream 76309 10756141 ~ 10758646 (-) True AMCG00003069
AMCG00003071 mRNA upstream 114222 10794054 ~ 10807733 (-) True AMCG00003071
AMCG00003080 mRNA upstream 228160 10907992 ~ 10912581 (-) True AMCG00003080
TU176570 other downstream 339133 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1432775 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1822665 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2175909 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2732264 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 960984 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1014174 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2171189 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2171189 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 2171189 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile