RNA id: AMCG00003065


Basic Information

Item Value
RNA id AMCG00003065
length 4065
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00003065
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10686270 ~ 10693974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCAACACCAGCTGTTTCAAAACTAACTTCCTTCATACGggataaataatttgttttggttctgTATCGGATACATGtttatcttttcattatttgatcaaaacaaatgtattcatatatccAACTTTGAAGGCTTAAAGATTGCATGTTAAGTAGGTCGCCTCGGTGCAGTCGGGGGAGGCGATTCTGTCAAAGATTATGTACTAGTTTATTGAAGTTGCTGATGGCAACAGtcgtattaatattattaactgGGTGGTCGTGATacacactgggagcagcagaGCTTTAATCGGAGCCTTTGTGACAAGTGACGTGTGATGTGACAAGTGATGTGAGTGACTGTTCAGCCTCCCTGATCTGCAGACCTTACCGTACGGATGCCTCGGACCATTACAGTTAAACCCCTCAGTGTGTTTGACCAGTGACAACCTGGCACTGTCCACCTGGGTCAGATCTACAAGGGAGAAGGCTTCTGAACATCCTAGCCCCAGGCATGCCACAGGTACTAATGGGATGGAACCAGTGTTTGGTGAGGCATATGGGGGCCACAGATGCCTCTCAACATCCGATCAATTAGCAGCCTCTCCATCCTGTGGCAAGACTGAGAACGGACAGCTGGAGTGCCCTGAGAGTGTGGTCCTGATGCTGGGGTCCCCGGCAACACCCCGGAAACGGGCCTTTGAGCTGCTCAGTGACCTAGTAGATGATGGGTTCAGTGAGGAACTGCATCCAGAGCGCTGGGATGTCTCTGCACTGGATGACATCACCCGCTATGCCAAAGGAGTTCTGGAAGGCGAACTAGGAAATGTGGAGGGGATGTCGGGGGACAAGTGGATTAAtgcaagagaaagagagcagCCAGGGGCCTTGGGAGTGATGAATCTGCAGGGACAGAGCTGTCTTTCCCCCAGCCCTGCATGCAAAATCAGTTCAGCCAGGCAGGGGGCAGCGCTGAGTGAAATGCCAGAGACAGGAGCAGATCCCCAGCGCCAAGAGGCAGGAGACATCCAAACGGGAGGGGATGGGCAATTATCAGGGTCCACCTCGGAGCATTGCAGCGAGGAGCACAACTATTCCCTGCAAGCTGACCCGGACTCCGGCTCCAGCCAAGGGTCCGGAAGTGAGTCGGCTGACacggaggaagagggggaggaggaggaagaggagatggGAGAGCAAGGCGAATCCAGCTCATCCGCAATGGACTCTGACCTTGACCTTGACAACAACCCCGCTGAAAGGCCGCAGAAGCGCAAGTGTTTCTGGGAGTACAGCCATGGGCAAGAACCCGGGAGTAAGAAAGAGCGTAGCCAGCCCTCAAATACCTGGAGCTCCGGCACGCTGCCCAGCAACCTCTACCAGAGAGAGGGGGCCTCGGCTTCTGGGAGGAAGGGTCTACGGAAGGCCCGGAAGACAGACGCGAGCGATCTGACCCCCAACCCGCAGAAATTGTGCAGTATTGGAGAACAGTTACACAAACTGAACAGAGCCATTGAGGATATGAGGCCAGTCAACGACCTGCCTGTCACTGCCAGGGCCCTCTCCcggaaggagaaaaacaaactggcTTCCAGAGCTTGTCGTCTGAAGAAGAAAGCGCAGCATGAAGCTAACAAGATCAAGCTGTGGGGTCTCAATCAGGAGTATGAGGTCATAAGACAGAGAGTGGAGGACAGTGGAGCAGAGGATGAGATGGGAATGACGGAAAAGCTTGAGAATATACTGAAAGAATCCACTGGCCCACACGTAGCAGGACGGACCAAAGAGTTTGTTGAGCAGATGCTGGAGCACAGTGCAGCAGGACGACTGGCCAAGGTGCTGAATAAGGGCAGCTCGACCACCGCTTTTACTGTCTGATCCACTGTGCCACCCCCACCTCCGGTAATCTTTGCCAATCTGTCACTTTGCACTTTCTTATATGCGATGAGGTGAGGGTAGGGATTTTTTGGCATCTGTTGAAAACTCACATTAAGGTAGCATTCTCAAGTCcctttctgttgttttgcttttcatttactttaaaaaagaaaaagaaaaaaaaactttggtaGCATAATGTCTCTGTTCATTGCAGGCTAGCTGCTAGGTttcacatgtatgtatttttagttcCTGTACTTAATATGTTTTATCCCATTGTGCCTGAAAACAAACTCCTTGCAATGCTTATAGAACTTGTGGGCACAGATTGGTGGTTTGGTATGTTGTGCAACGGGAAGTAAACCagaacaggaaagaaaacagaccGGAAGCTTTTTGAGACCAGACCAAAATACCAATTTAAAGATAGATGAGTGTTATTTaagacatttcaaaaatgtatatcaaaacCTACAGGATAATCTTGTCAGAACTGCTGATTTAATGAGAGaaagatgtacattttaaagtgttttgttgtttgtgacTGTTTCAGGAAACTATGAACAATGGGCATAACtgaattactgaaaataattcTGTCAAGAGAACATATGTCCAAGCTTTCTTGATCTAATTTAAAGAATGGCATTAATGTTGGTGCCTTTGTTAAAACCTAGAAACAGACTAATTTCATTTCAGAGTGTATTTTCATATACTCTCaagctttgaaaatgtgaacCGACCCAGATAACTCTCTGGACTGAAAAATCCGAAAAAAAGGGCTGGAGTCAAAAAGATGcactaatttatatattttatatacaggaTCATGGTGTCTACTTACTGATTTTCAAACCAGCAGACTTCCTGGTCCAGTTACTCGCTGATCTCACAGACCAAGGACACTGTCTCTGgtgctttgaaaaataataatagttattaaaaTCATGGTAAGACCTTAGCCccttaaacattttattgagttaagaatacatcaaaaatataacatttaagaTGCACTTAAACTACGGTATATTTccttaaacttttaaaaatatttcatttaatcgAATATAGATTATTACCCACATCACAGACACAAGTGAATATATCTGCCAGTAAATAGTCTCTAGTTTCAGTAATTTActagtattgtatttttgttttagtacacaaacattttagtatataaaacattaGTGTTCTctgactgtttaaaaaaaacatttagaaaaggCAATATTGTTAAATGACACTTGAGAATGTAAACCAAAGAAAAAGATGTGAAAGATATCAAAGGtggaacaaaatgcattataactCCATTATACCAATCTCTGCAGTCACTCCTGTGTCCAGTAGTATCTACCTAAATATGGAGAAAATGTTTCATGCTATATTTTGTTCGTCTTTGTTTATGATCTCATGCCCTTTTGCATGACACCATCAGATGTAACCGTTCTGCCTTGAAATTAGTCTGATATACTAAGAGAATCTTtaaagcaaaaaactaaaatctgttGATGCGAGATTGTTGTTTGTATTATGGGGAAGATAATTGCACTTTACAAAAACAAGCCCTTGCTAATGTTGTTGCTTCGGGCAGGGATACAGTGCTCATAAACATACAGTCCCAATAAGCTCAATAactgtatttcatttcaaaatgttgcaCCAAATGGGAGGAAGAGGCAGCCAGGGGAAAACCCAAACCTCCCAACCTGTGATTTAAAGGCACTGCATTCCCAAGACTCTGCATATTAGCAAGACGGCTGCTGCCAGTGAATTGGAGATCATTCCGCACCATTCCGTACAAAATGCTAAATAAGGAGAAAGCTTaaaaggaagagggagggaagtagccgtgtctgtactgtatgtatgtatgtataaccGAAATCGCTCCATCAGGAGTCTTCATACTGTCAATCTGAAGTGCTTTAAATGGAACTGCAAATATCCGCAACACTCTGTGTCATGTATATCCAGTGTAATCCAACCCTGGAAACCATAACCATGCTTTGGTGTGGCAACAGGTAACACTTGTTTTAGATGCCCTTACGTTTCtggttaaaatgaaaaaaacgttaaaaaaaaaagtgcagttgAAATAGAAGcctgatattttattattgttctctGTGAGCGTACTGTATTCCcagtataatgtatattttaatatttataagcagctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 2658 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 29279 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 53781 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 58388 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 396335 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 513532 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 551282 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 786831 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 794256 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 843673 11537647 ~ 11537954 (+) True G140723
AMCG00003066 mRNA upstream 2658 10681015 ~ 10683612 (+) False AMCG00003066
AMCG00003057 mRNA upstream 64122 10612506 ~ 10622148 (+) True AMCG00003057
AMCG00003058 mRNA upstream 120652 10543469 ~ 10565618 (+) True AMCG00003058
AMCG00003053 mRNA upstream 201428 10462276 ~ 10484842 (+) True AMCG00003053
AMCG00003050 mRNA upstream 360056 10325714 ~ 10326214 (+) True AMCG00003050
AMCG00003064 mRNA downstream 11659 10705633 ~ 10719938 (+) True AMCG00003064
AMCG00003070 mRNA downstream 87027 10781001 ~ 10787555 (+) True AMCG00003070
AMCG00003075 mRNA downstream 124930 10818904 ~ 10824933 (+) True AMCG00003075
AMCG00003076 mRNA downstream 166724 10860698 ~ 10862116 (+) True AMCG00003076
AMCG00003077 mRNA downstream 172665 10866639 ~ 10881830 (+) True AMCG00003077
TU176317 other upstream 905818 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1355806 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1381430 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2642050 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2759438 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 60927 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 515599 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 792217 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1679992 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2036757 12730731 ~ 12739767 (+) True G140939

Expression Profile