RNA id: AMCG00003071


Basic Information

Item Value
RNA id AMCG00003071
length 2685
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00003071
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10794054 ~ 10807733 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCGGATGCTGCGGCTGCACTCGCATCCCTCTGCATCCCGAGACCCCCTCCCCTGCCTCTGCTCTTCGTCTTCGCCATTTCTTTCCCCGCCTCGGCCCTGGGCTTGCTCGGGTTCCGGCCGGAGGACACCGGGGGAGAGCTGTCCGTGGAAGACGGGGTGCTGAAGGCGACCGAAGGAACACGGTTCAGGCTGCGTGTGTACTATGCAGCATCCCAGCAGAGACTCAACAGGACCGTCGGCGGCAGAGCCGGGGAGGCAGCTACTGCGCCGTGGATCGCCTTTATCGAAGAGCCGACCCCGGGCAGGGAAGGGCAGGTGCATCCCAAACGGAACCCATGCCTGGACAAGAACGCCAGGACCTCCGACATCGAGTTGCTGGGCTCGTTCAAATCCACCTACAGCCAGAATTCAATCTTGGTGGAGCTTCTGGCTAAGGACCTGCGCAGAGGTGAGAAAATCAAATATTATTCTATGTGTGCCTTTGATGGGGCCAAGTGGGAGCACTTAAGGACTAGAGATTTTTGGCTGGCTGTGGTGGAGCGTCCCACAGAGGCCGACCTTTGGATGCAGGTGTTGGTGTCAGTGGTGCTGTTGACGTTTTCCGCTCTGTTCAGCGGGCTCAACctgagcctgctggccctggaTCCCGTGGAGCTGCGAGTGATCCAGAACAGCGGCACCGAGAAGGAGCAGAAGTATGCCCGCACAATAGAGTCGGTCCGAAAGCACGGCAATTACGTGCTGTGCACCTTACTCCTGGGCAACGCGCTCATCAACGCGTCTTTAGCGGTGTGGATGTGCCAGATATTAGGACTGACATGGCTCTCTATTCTGGTCTGCACTTTTGGTATCTTCTTTATCGGGGAGATCCTACCGCACTCTATTGCCTCCAGACACGGGCTAGCTGTCGCATCCAAGACCATATGGGTAACTCGTCTATTAATGGTGATATCCTTCCCTATCTCCTATCCGATCAGCAAGCTCCTGGACACCATCCTGCACCAGGAGATCAGCAACTTTTACACACGGGAGAAGTTACTGGAGATGCTGCGTGTGACGGACCCATACCACGACCTAGTGAAAGAAGAGTTAAACATCATACAGGGCGCCTTGGAGCTCAGGACAAAAACAGTGGAAGATGTGCTGACACCGCTGAACGACTGCTTCATGTTGGTCCTGGATGCCGTGCTGGATTTCAACACCATGTCGGAGATCATGCAGAGCGGATACACCCGCATCCCAGTGTACGAGAACGAGAGGTCCAACATCGTGGACATCCTCTTCGTCAAAGACCTGGCCTTCGTGGATCCAGATGACTGCACCCCTTTAAAGACCATCACGCAGTTTTACAACCATCCCCTGCACTGTGTTTTTAACGACACCAAGCTGGATGCAATGTTGGAGGAGTTTAAGAAAGGTAAATCGCACCTGGCCATCGTGCAGCGCGTGAATAACGAGGGGGAGGGCGACCCTTTCTACGAGGTGATGGGCATCGTCACTCTGGAGGACATCATCGAGGAGATCATCAAGTCAGAGATCCTGGATGAGACCGACCTGTACActGACAACCGCACCAAGAGGAGGGTGTCGCACCATGAAAGGAAGCAGCAAGACTTCTCCCTCTTCAAGCTGTCAGAGAATGAAATGACAGTGAAGATCTCTCCCCAGCTGCTCCTGGCCACACACCGATTCCTGGCAACAGAAGTGGAGCCCTTCAAGACCTCACACCTCTCAGAGAAGATCCTCCTGCGCCTGCTGAAGCACCCCAACATTGTCCAGGATCTCAAGTTTGATGAGAAACACAAACGTGCGCCACAGCACTTCCTGTACCAGCGCAACAAGCCGGTTGATTATTTTGTCCTCATCCTTCAGGGCCGAGTGGAGGTGGAGATTGGAAAAGAAGCTCTACGCTTTGAAAATGGCGCTTTTACCTACTATGGCGTGCCTGCCATCATGTCCACACTGTCCTCGGTCCACAGGTCACCGTCTCGCAGCAGCGGACTCAACCACTCCGACTCCATGATCTACGGGGGCAGCATGAGCCAGCTCAACACGGGCAACAACGCGTACCTGCCTGACTACTCTGTCCGCCAGCTTACTGACCTGCAGATCATCAAGATCACACGCAGTCACTACCAGAACGCCCTGACAGCCACCCGCATCGACAGCTCCCCGCAGACGCCCGACACGGACGCCCAGGTGAACGAAGAGTGCACGCCCACCCCCGAGGAACCCGTCCCTGAGGCTCGCTCCATCAGCATCCCCCTGCCCCTCCCGGAGCCCAACGTCGTGGCCACACGGAGCAGGCCTCTCATCAGCAGGATCCAGCACAGCACCACACTGCTCAACGAGAAGAACCGCATCGTCCGCAGCAAGTCCGATGGCCAGAAGAGCCCCAGTGATTCGGTGTTCCTGCGGATGGATGAGATTCCTTACATCAGGGAGGACCTGGCTGACCGTTCGGAGAGTAACGGGAAACACAATAAGGACAGTGCCGCAGTTCCCATGGAAACAGTGCACCCCACCTCCCCTTTCATCAGCAGTCTGTCTCTGAGCGCCTCCGATGAAAATCTGGGCAAGAAACTCCTGCGCAAACTCAGcaataaaaagaggaaaaagtcTCGAGATGGGGAGAAAACCCCAGAGGATAACCCCGAACTGCCTCTGATGAAGACTTAG

Function

GO: NA

KEGG:

id description
K16302 CNNM; metal transporter CNNM

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176659 lncRNA downstream 137057 10653325 ~ 10656997 (-) True G140458
TU176655 lncRNA downstream 170312 10622606 ~ 10623742 (-) True G140456
TU176545 lncRNA downstream 454794 10221780 ~ 10339260 (-) True G140368
TU176422 lncRNA downstream 756197 10036178 ~ 10037857 (-) True G140279
TU176363 lncRNA downstream 904428 9889158 ~ 9889626 (-) True G140228
TU176739 lncRNA upstream 11036 10818769 ~ 10819159 (-) True G140521
TU176757 lncRNA upstream 118385 10926118 ~ 10929972 (-) True G140537
TU176774 lncRNA upstream 157799 10965532 ~ 10967602 (-) True G140546
TU176798 lncRNA upstream 203405 11011138 ~ 11037311 (-) True G140567
TU176821 lncRNA upstream 299663 11107396 ~ 11107604 (-) True G140588
AMCG00003069 mRNA downstream 35408 10756141 ~ 10758646 (-) True AMCG00003069
AMCG00003068 mRNA downstream 50364 10730942 ~ 10743690 (-) True AMCG00003068
AMCG00003067 mRNA downstream 93441 10694592 ~ 10700613 (-) True AMCG00003067
AMCG00003061 mRNA downstream 114222 10670505 ~ 10679832 (-) True AMCG00003061
AMCG00003062 mRNA downstream 131951 10657061 ~ 10662103 (-) True AMCG00003062
AMCG00003080 mRNA upstream 100259 10907992 ~ 10912581 (-) True AMCG00003080
AMCG00003078 mRNA upstream 111416 10919149 ~ 10923578 (-) True AMCG00003078
AMCG00003081 mRNA upstream 137286 10945019 ~ 10951437 (-) True AMCG00003081
AMCG00003079 mRNA upstream 146855 10954588 ~ 10956401 (-) True AMCG00003079
AMCG00003089 mRNA upstream 232604 11040337 ~ 11047762 (-) True AMCG00003089
TU176570 other downstream 462682 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1556324 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1946214 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2299458 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2855813 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 833083 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 886273 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2043288 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2043288 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 2043288 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile