RNA id: AMCG00003072


Basic Information

Item Value
RNA id AMCG00003072
length 2776
RNA type mRNA
GC content 0.47
exon number 17
gene id AMCG00003072
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10922596 ~ 10941584 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAACGGATGTGCAGGCAGTGAGTGGCGACGCtccttcctttttaattttgtgtccGAGACGGAGAGTCATCTCCGTCTTTGGGAAGAACTTATCGGGGAAAATGCCAGGAAAACTTCTCGAAGTAACTGAAGATATCGAGATGGAAAACGAGGTGGAAATAAGCAAGGAGGAGAGGAAGTTACTCAAGaaacagaagaaagaaaaatccaaagagggaaaaaacaagaaaaacaaggcaATTATTGAAGAGCAACCCGATGAGTTCAGTCCACCAActcccaaaaagaaaaagaaagaggacaCCCTGAATGGAGACTctggaaagaaaaggaagtCCAAGCAGGTCAATGGGACCCCCAAAGCGACCACACCATCTCATTCCAGTGAAGAATCCAACACCTCGGACCAGGAAACCGAGCCCAAGacgaagaagaagaaaaagaagaaggagaaggagcaAGTCCAGCCAAATGCCAATGGAAACTCGGAACCAGAAACGTCAAAGCTGCCCGCCATCTCCTCAGTTAATGGAAAACCACCAGTGGACATGCCATCTCATTCCAGTGAAGAACTGGACAGCGACAGTGACAAAGAAGTGGAATTGACTCCAGAGCAAAAAGAAGGCGCCTTCTCTAATTTCCGAATCTCCAAAGAGACCATTAAACTGCTTGAAGCAAAAGGAGTGACATACTTGTTTGACATCCAAGTGAAAACCTTCAACTCTATATATGATGGAAAAGATGTGGTTGGGCAGGCCAGGACCGGCACGGGAAAAACCTTATCGTTTGCCCTCCCTCTCATTGAGAAACTCCAGTCATCCCAGGAAGAACGCAGGAGAGGAAGACCGCCAAAGGTGCTGGCTCTTGCCCCAACAAGAGAGCTAGCTATTCAAGTTGCCAGAGATTTCAAAGATGTCACAAAGAGACTTTCAGTCGCTTGTTTCTATGGAGGCAGTGCTTACAATGCCCAATTTGATAGCATTCGCAATGGCATTGATATCCTGGTGGGAACCCCGGGCCGAATTAAAGACCATCTCCAAAATCACAAGCTGGACCTGTCCCAGCTGAAGCATGTGATCCTGGATGAAGTAGACCAGATGTTGGACATGGGCTTTGCAGAGCAGGTAGAGGAGATTCTGGGCACTGCCTACAAAAAAGCACTGATGCAGGATTGTTTTTTCTCAGATTCAGAAAGCAACCCACAGACTCTGCTTTTTTCTGCCACGTGTCCTCATTGGGTATACGATGTGGCCAAGAAGTACATGAGACCCGGCTATGAGCACGTTGATCTCATTGGTAAAAAGACCCAGAAGACTGCCACCACTGTAGAACACTTAGCCATCGAATGCCATTGGTCCCAGCGGGCAGCGGTGCTTGGTGATGTCATCCAGGTGTACAGCGGCAGCCATGGACGAAGCATTATCTTCTGTGAAACCAAGAAAGAAGCCAATGAGCTGGCACTCAATGCTTCCATCAAGCAGGATGCCCAGTCTTTACATGGGGACATcccacagaaacagagagagatcaCACTGAAGGGCTTTAGGAACGGATCCTTTGAAGTGCTGGTAGCCACAAATGTTGCCGCTCGAGGTCTGGACATTCCAGAGGTTGACTTGGTCATACAGTGTTCGCCACCAAAGGATGTGGAGTCTTATATCCATCGTTCAGGTCGGACTGGCAGGGCTGGGCGTACTGGAGTTTGCATCTGCTTCTACCAGCGCAGAGAGGAGGAGCAGCTCAGATACGTGGAGATGAAGGCCGGCATAACATTTAAGCGAGTCGGTGTCCCAAGTGCCAATGAAATCATCAAGGCTTCCAGTAAAGATGCAGTAAAGTATGCTGCTGCCATCGAGTATTTCCGCGTGGCAGCGGAGAAGCTGGTGGAGGAGCGGGGGGCCGTTGAGGCCCTGGCTGCTGCCTTGGCACACATGTCCGGGGCCACTGCCATCGAACAGCGCTCCCTGCTCAACTCTGACGCGGGCTTTGTAACCATGATGATGACCTGCTCTGTAGAAATGCATAACATCGGCTATGCTTGGAGGGGCCTGAAAGAACAGCTCGGCGAGGATATGGAAAGCAAGATCCAGAGGATGAAATTCTTAAAGGGCAAGACTggtgTGTGCTTTGATGTTCCTACAGATAATGTGAAGGAAATCCAGGAAATGTGGCAAGATTCTCGGCGCTGGCAGCTGTCCATAGCAACGGAGCTTCCTGATCTGGAGGAGGTCAAGCGCAGTACGGACCAAGGCCTTCGCGGGTCTGGGGGGAGGTACTTCAGAGGTGGcggaagaggagggggaggaagaggcGGAAGAGGAGGCAGAGGTGACCGgttcaacaacaacagaagGGGGGGCCAGAAAAGAAGCTTTGGCCAAGCATTTGACTATTAAACTGCAACTCGTGGACTGATAATATTTTTGCCACTTTAGATATCGCCAGTCAGTGGCAGTCTGGAGAACTGCAACTTCTttcctcaaaaaataaaaataacaaaacattaaaaaaattgcaaaaaagTCATTTTACCTAGAAACCTGTAAGTTATGACAATTGCATTGCGATTACATCTTATATAAGCCCATTCACTGTCGAATGAGATGAAAATAAAGGTGTCTTcaaatatagtttgtttttcttttcatctggTAGAAAAGCCATTCAGTTACAGTGTAACACCTTTagttttttgttcctgggtagtaagtgttattaatttcctaattgcttatgtatttacagtatgatcgtaaatctcaaaactattca

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K16911 DDX21; ATP-dependent RNA helicase DDX21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 238984 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 265605 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 290107 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 294714 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 632661 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 265922 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 303672 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 539221 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 546646 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 596063 11537647 ~ 11537954 (+) True G140723
AMCG00003074 mRNA upstream 4552 10915617 ~ 10918044 (+) True AMCG00003074
AMCG00003073 mRNA upstream 14886 10900815 ~ 10907710 (+) True AMCG00003073
AMCG00003077 mRNA upstream 40766 10866639 ~ 10881830 (+) True AMCG00003077
AMCG00003076 mRNA upstream 60480 10860698 ~ 10862116 (+) True AMCG00003076
AMCG00003075 mRNA upstream 97663 10818904 ~ 10824933 (+) True AMCG00003075
AMCG00003084 mRNA downstream 18395 10959979 ~ 10961493 (+) True AMCG00003084
AMCG00003086 mRNA downstream 21622 10963206 ~ 10967428 (+) True AMCG00003086
AMCG00003082 mRNA downstream 31905 10973489 ~ 10982163 (+) True AMCG00003082
AMCG00003083 mRNA downstream 44542 10986126 ~ 10994512 (+) True AMCG00003083
AMCG00003087 mRNA downstream 53721 10995305 ~ 11002093 (+) True AMCG00003087
TU176681 other upstream 165756 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1142144 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1592132 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1617756 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2878376 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 267989 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 544607 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1432382 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1789147 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1937101 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012322 True 2544 mRNA 0.56 16 NC_007124.7 319576 ~ 330004 (-)
grasscarp (Ctenopharyngodon idella) CI01000005_07337613_07348597.mRNA True 1852 mRNA 0.56 13 CI01000005 7337613 ~ 7348597 (+)