RNA id: AMCG00003073


Basic Information

Item Value
RNA id AMCG00003073
length 3024
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00003073
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10900815 ~ 10907710 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCAGATACGCGCACACGTCGCTGGTCACATGACAGGAGCAGCCGCTTGTTTCGGAAGTGCAGGACTGGGACGGGCACTGATGAAGTGTCTATTGGTAGCCAGCGATAATGCGGAGGTCCTGTTCTACTGGACCGACCCGGCCTTCGAGAGCAACATCCAGGACCAGTATGGAGCCGCACAGCAGGGAGGGGAACGGCCCCCAGCTTTTGAAGACAGCATCAACACACTCTTCGCGCCCCTCATCATCTCCTGCAGCACCATGATTGAGAAGATCAATGACACCTACACCTGCTTCAGCACTGAGAATGGACACACCTACATCCTCCATCAGtttgGGGAGTGCATATACATTGCCGTGAATGGAGATGGGGAGGAGAGTGAGGATGACTTGAGGAGGAAGATCTACGTGTTGAAGAAGCTGATAGAGGTGCACTTTGGGATGGTGACTCTCAATGGCACCCTCTTGAGGAAAGAACTTCGCCCCCAGGACACGGAGCAGCGACACCGCCTCTGGAAGATGTTGCAAAGCCTACTTAGCACTTATAGCCGTCTGAGAGATCAGGACCAGAGCTTTCTGGTCGAGGCCGTAGAGAGGTTGATCCAGCCGGCACTGTGTGAGCAGTGCATTGAGTTCCTGGAGCGCCGGCTGGTCCAGCAGATCAACAGCAGCGTGGAGCGGGGAGGGGAGGAGGTGCTGCACGCCTTCATACTGGTGCACAGCAAGCTGCTGGCCTTCTACTCCAGCCGAAATGCCAGTACAGTCAGACCTTCGGACCTGCTGGCCTTGATCCTGATTGTGCAGAACCTGTATCCCAGCAGCAGTGATCAGGAGGACTCGGCCCCAGAGGAGTTGGATGGCAGTTCAGCACCCGATGTCTTCTACACCCCAGAAAACTCCCCCTCTAGCAGGGATTCAGACTCCGTGGGGATGGAAAGGGAGAGCACTCCCGTGTTCCAGTTTGTTGACCCAGATATCCAGatggCAGAGGACAGCCTGAAGACCCTAGAAGCCCCACCCCCTGACCCTGCAACGCCCCTCAGGGTCTTCCTAGATGCCACTGTCAAGGAGGGCCACTGTCCCATGATGCCTCACTCCATGTACTGTCTACAGCTCTGGCCTGGTATCACTCTGGTGCTACTGACAAAGATCCCCCATACCCAGGTGGCTGTGTCTCTATACACGTACCTGGATGCCTTCACGGTGCTGGAGAAAAAACTAAGTGATGTGCAGGAGGGAAGTGCACCCCCCCGCTCTCCATCCCCTCTCCCTGACCTCCGCAGCAAGATGGACAAGTTCATCCGGGCTCTGAGCAACAGCGATGTCCAGTTTGCCCAGCTACAGGACACCTGGGCAGCCTTTAAGAACAAAGCATTTGCAAGAGGCAGCACGGGGAACAGTAGGGATCTCCTGCCGTCGTGCCGTGCCATGAAGACCCAGCTGTGTGCCATCTTCAGGCAGTACTTCCTGATAGAGAGTGCAGGGAGCCCCCAGCGCCTGGCCCCCAGTCTGCAGGAGAGGGCCCTGGCCATGGTGCAAGACAAGCTAATGGATTGGAAGGACTTCCTGCTGGTGAAAAGCAGGAGGAACATCACCATGGTGTCATATCCTTTCAGGGCAGCAGTCTCATTCCTTAACTCTCTTATCACATACCTGGAGGACTTCCCTGGGCTCGTTCACTTCATCTACGTGGATCGAACCGCAGGCCAGATGATCGCCCCGTCCCTCAATGTAACGGACCGCTCGACCTCGGAGCTGGGGAAGGGGCCTCTCCCACACTTTGTCAAGAGCAAGGTGTGGAGTCTGGTGGGAACAGCAAGGCGCTACCTTCAGAAAGGCTACACCACCGTGACCCTGCGTGACGGAGACTACTACTTCTGTTACTTTCTATGGTTTGAGAATGAGACGGGGTACAAGCTGGAAGTGATAGAGCTGCCAACCCTCCCTGACGACTCTGCTCCTATTGGCATGCTGGCTGGGGACTATTACAGGAAGCTCTTGAGGTACTACAGCAAGAATCACCATGCGGAGGTTGTGAAGTGCTATGAGTTACTGACCATCCACCTAGGAGTTATCCCTACTGAGTATATCCTACAGCACTGCTGCCAGCTGGCCAGGAAACTGTGGGAGCCCTCCCGCATCCCCCTGCTTTAGACGCCGGGGGCAGCAGCACGCCTCGCTTACCATACGGGTCCCTGCCTCTCTGTTGATGTCAGCTCTGCCTGCTGTAACCCCTGACGGCATATCCACCGCTCACTGCACCGCTTAGTGTACCTGCATCGCTTTCTCCCTTTCCACAGTGTTGTCTCACTGTTTGTGCCTTATGGGAATTCAGTGGCCTGCAGGTACGctttaatattgatttttgcTACACCTCTAAGGCTGTGAATGGGCAGAGTTAGTGCTGCCTAATGTGTTGAACATGCAGAAGTGCTCAAATATCATAAGATTTCCCTAGTCTGACACTGGAGTTCATACCCATACATCAGATGCCTCATATCCACtgcaaacaacatttttttaatattcactATTCGTCCTCTTTTATTATTGATGGTTTTAACTTGGAGGTTAActatcattttcttttgctgacatctttattaattttaaaagccgATACTACAGTGTGCTGATTTTTCATGAAGGACATTCTTTACTCTCTTTAGTTCAACGGCTCCTTTTGCACCGACTCTTGAAAATGTCTTATTACCGATGATTTTACTTGTCAAATTCAGAACTGCCTTCTCTTACAATGTACACTGAGAGACCCTCTACTTGCTGTTCACTAAAATCACTGTACTTTTCCACTCAAAGATATATATCTTATATGAAGTAGCTATAGCAGATGAAAATTTTGAAGTATATATTATTAGGTTATTCCATGTATAACTATACTGCAGGATTACAATGCTGTACTTTATCATTTCAGAAGTTGCCATTTTTGAATAATGtgaactgttttatattttttattgtaattattctttcattattgcgatattaaaatcatatttttaa

Function

GO: NA

KEGG:

id description
K20193 HPS1; Hermansky-Pudlak syndrome 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 217203 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 243824 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 268326 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 272933 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 610880 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 299796 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 337546 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 573095 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 580520 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 629937 11537647 ~ 11537954 (+) True G140723
AMCG00003077 mRNA upstream 18985 10866639 ~ 10881830 (+) True AMCG00003077
AMCG00003076 mRNA upstream 38699 10860698 ~ 10862116 (+) True AMCG00003076
AMCG00003075 mRNA upstream 75882 10818904 ~ 10824933 (+) True AMCG00003075
AMCG00003070 mRNA upstream 113260 10781001 ~ 10787555 (+) True AMCG00003070
AMCG00003064 mRNA upstream 180877 10705633 ~ 10719938 (+) True AMCG00003064
AMCG00003074 mRNA downstream 7907 10915617 ~ 10918044 (+) True AMCG00003074
AMCG00003072 mRNA downstream 14886 10922596 ~ 10941584 (+) True AMCG00003072
AMCG00003084 mRNA downstream 52269 10959979 ~ 10961493 (+) True AMCG00003084
AMCG00003086 mRNA downstream 55496 10963206 ~ 10967428 (+) True AMCG00003086
AMCG00003082 mRNA downstream 65779 10973489 ~ 10982163 (+) True AMCG00003082
TU176681 other upstream 143975 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1120363 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1570351 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1595975 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2856595 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 301863 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 578481 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1466256 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1823021 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1970975 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile