RNA id: AMCG00003076


Basic Information

Item Value
RNA id AMCG00003076
length 348
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00003076
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10860698 ~ 10862116 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTCTTTAGACAAACTCTACAACTTTGCCGACTGTGCCGGGCTGCACCTGATTTTTGGGCTCAACGCCTTCCATCGGAACCCTGACAACTCCTGGAACGGATCCAGAGCACTCGGTCTGCTCAAGTACAGCGCCGGCAAGAAGTACAACCTCTCCTGGGAGCTGGGCAATGAACCCAACAGTTATCGTGCCATGGTGTCACGCGCTCTCAACAGCAGCCAGCTGGCACAGGACTATACCCAGCTCAGGACTCTGCTGCAGTCTGTGCGTTACTACAGCCGTGCCAACCTCTATGGGCCCAACATCGGACGGCCGCGCAAAAATGCCATCCTGCTGTTGGATGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 177086 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 203707 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 228209 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 232816 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 570763 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 345390 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 383140 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 618689 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 626114 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 675531 11537647 ~ 11537954 (+) True G140723
AMCG00003075 mRNA upstream 35765 10818904 ~ 10824933 (+) True AMCG00003075
AMCG00003070 mRNA upstream 73143 10781001 ~ 10787555 (+) True AMCG00003070
AMCG00003064 mRNA upstream 140760 10705633 ~ 10719938 (+) True AMCG00003064
AMCG00003065 mRNA upstream 166724 10686270 ~ 10693974 (+) True AMCG00003065
AMCG00003066 mRNA upstream 177086 10681015 ~ 10683612 (+) False AMCG00003066
AMCG00003077 mRNA downstream 4523 10866639 ~ 10881830 (+) True AMCG00003077
AMCG00003073 mRNA downstream 38699 10900815 ~ 10907710 (+) True AMCG00003073
AMCG00003074 mRNA downstream 53501 10915617 ~ 10918044 (+) True AMCG00003074
AMCG00003072 mRNA downstream 60480 10922596 ~ 10941584 (+) True AMCG00003072
AMCG00003084 mRNA downstream 97863 10959979 ~ 10961493 (+) True AMCG00003084
TU176681 other upstream 103858 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1080246 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1530234 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1555858 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2816478 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 347457 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 624075 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1511850 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1868615 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 2016569 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012169 False 1683 mRNA 0.50 14 NC_007124.7 40501455 ~ 40668077 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_02413852_02502617.mRNA True 1710 mRNA 0.49 12 CI01000012 2413852 ~ 2502617 (-)
mexican tetra (Astyanax mexicanus) TU433326 True 1345 lncRNA 0.50 9 NW_019172868.1 2116507 ~ 2131133 (-)