RNA id: AMCG00003078


Basic Information

Item Value
RNA id AMCG00003078
length 3124
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00003078
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10919149 ~ 10923578 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGACCGGGCATCCAGCATGGGCACAGCACAGTGTGCCCGTTCACACAGCCAAGGACAGCCACTGGCAGACCTGCACACTGCCCATTCGTGGGACTACAGATTCATTTGCAAGCGGCTGATACAAAACAGACTGAAATTGCCGACTTACTGTTTTTGAAGTAAAGATACAGATGGCCGGCCCAGTCCCACCCTCCTCTCACGCAGTCGCTCTGCTGAATGAGCTGAACTCTCAGAGGATGGAAGGCCGCTTCTGTGACTGTGTGATCAGACTACAGCCCCACCCAGAAAAACTCTACACGGCCCATAAAAATGTGCTGGCTGCTTCAAGCCCTTTCTTGGCATCTCTATGTATTCAAGGGGTGGTGTTGGAGTTGGGGTTCTCTAGTCTCACCCCTGAAGTAATGGAGCTGCTCTTGGAGTTTATCTACACTGGCACCTTGCCTCCGCCCGAGCAGGAGGATTCGGTACGCTCTGCTGCGATCTATCTCGGGGTGGGAGGACTCCAGCAGGCTCTCAGACACAGAGATGCTGCTTTGTCTTGGTCACCTGGACAAGGAGAAAGAGCTCCAGCTAAGGACCAGGGAGCAGGTCAGGAGTGAtgacattacaaaaacacacagtctgcttatgtgtgtgcatgtctgctTGCTCCTATGTTCATATGTCTGTCAGTCCTGTCCTTTGTCACTAGAGCTGTCCATCCTTCCCTGTGTCCGTCGCCATTTGTGTCTGTCCATTCCATCATTGCAACAGCATTTATCTATGCCCATGCTTGCCACATTCAGCACTATTTGAGACaaggtggtgggggtggggagttAGTCTCCAACACAAATTCAATCTGCCTTGAAtttgtgacatttttgtttggGATGAATCATTGCCAAACAGCATCACATTAGATGCAAGACATttgaactacattttaaaatcatatttaaacacTCCTTATTTTCCCTGCCAGCTGACTGGGAAACAAAcggaacacatataaaaagaCGATTGCTCGAGAACAGGCAAATTGCAAGAAATCTCCGATCCCCACCTCTCGATAAGGAATCTGAATCGGCCAAACAACTGATGTCCAGCTGTGAGGTAGTTCCTGTAATTTGGCACACGAATAACACTGAAAATCGAGGTATCCTCTCTCGCATCCCTGAGACAGAGATTCTTGCTCAAAGCAGGGCTTGTGGTTCAGTGCTGGAGGAGGTCTTTGGGGGCAGTGAAGTCAAGGAGGCAGATCACAGTGATCAACCATCAACAGTATGTCATTCTGGAAACCCAAACTATGGATTACAATATGGTTTATACGGGGCAGATTGTTCTGGAGGAGGAATTTTGGAGCAAGCAATTCATCCTTCAGTTTTGACTGGCACTGGAAATTGTGCCCCCCCTTGTTCTCCCATTAAAGAAACTGCTGCACTGTATGAAAGCACAAGAGACTTTCAAGATGAAAAATCATTTAGTGTCATAATGAACACACCTACCATGTCAGATGCCATCAGTGATCGTGATAACCCACTGGATAACCCAGTGGACAATGATGTTTTTGCTGAATCCACTGTAAGTTGTGCTGGGAGAAATGTAAACCAGAATGAATCGACTCCCGTTCACGAAAGCATTCACCATCGTTTTCACACGGATGAAAACATGAGTGATACTGAAAGTGACACAGATTCCACGAATCACGTGGCGGGAGCTGATGACTGTAGTACTAGTATTGTAAGTGGCAATCCAGTGACTTCAAAGGATGAGAGTTGCAGCTTTCTGAATGGAtcaatttttaaaagtaatacaataaataaaagtcacTATCACGTTGACTGTTCATCTGCAAACCCAAATTATACTCTGAACGGTAAAGCCAACCAAGCAAAGGAGAATACTACCAATTCTGTTTGTGACTCATGGTCTGTTTTGACTAAATCACCTGAAAAGATGGCACCTGTAGTTAAGATCAAAGAAAGCAGTAATAAGAAGGAACATAGGGATGACTGCCAGGGTGAAAAGTTCAAGTTTTTGATCAAATCATTTCCCGAAAGCAACACAATGACAAACACTGGTGAATATCCCACTGACACAGACAATCAAGCAGCCAGAGTCCAGGGCAGTGACAGCAGAAATGCACATGAAAATGACAGGGactctgaaaaagaaaaggaggatGTTTTTAGCCAACAACAGAAAGTCCAGACCTACCGCGGTCAAGTGACCTATATTTGTCTTCTGAAGGAAACAAGCGATGAAACAAgtgattctgaaaatgaaagaagtACCATTCTGGCAAAAGCTGCTGTTGAAGGGGCCACACGACCAAACCTTAATGCCGTCCTATTTCAGAGGGTTCAGGCAAAGGAAACCACTGTGAATTATAGAGCCCTCTCTCTGCCCCGTGTAGCTCAGCCTTACCagtgctctgtgtgtgagagaaattTCAGCCAGCGAGGCTCTCTGAACAGACACATGCGTTCCCACCTGGGTGTCCGGCCCTACCCCTGTCCTCAGTGCCCTATGACTTTCTCAAGACAGTACCGTGTCATAGAGCACATGCGTGTTCATCAAAGGGGGAATGAAGGCTGAGAGAGGGCAGGTCCTGGCTAACTCAATAAGCAAacttgacattttaataatcttaGTTGCTAAAATGCTACTGAAATGAACAATATCTGTGGAAGCGGGtacaaaaacaatgactttGACACCTAACCTTGAATCTTGTTTTTATATCATAGATACAATTTTGCGagtcaaaagttttttttaatcattattacttGGGTGGGGTCTGCTTTCTACAGAGGATTATTTGTGTGGATGTgttgtgaatttaaattattgCTCTTTAATGAGTTTATATAAACTAAAATGCCAGATTGTTCTGCAGAGATTCTAGATGTGATTATTTGTGATGGTCACAAATAAGGTGCTGTTTTCTATATGGTTctgtaatacaaaatgcaatgttaCCAAATAACAAgactataaaaaacaaaacatttaacaataccacaattagatgtttatttcaaatttattttacaacatggTACTGTGACTAAatgttgatatttatttatattcattgttGTTCATATAATCTTTTGTAacagcaagaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176739 lncRNA downstream 99990 10818769 ~ 10819159 (-) True G140521
TU176659 lncRNA downstream 262152 10653325 ~ 10656997 (-) True G140458
TU176655 lncRNA downstream 295407 10622606 ~ 10623742 (-) True G140456
TU176545 lncRNA downstream 579889 10221780 ~ 10339260 (-) True G140368
TU176422 lncRNA downstream 881292 10036178 ~ 10037857 (-) True G140279
TU176757 lncRNA upstream 2540 10926118 ~ 10929972 (-) True G140537
TU176774 lncRNA upstream 41954 10965532 ~ 10967602 (-) True G140546
TU176798 lncRNA upstream 87560 11011138 ~ 11037311 (-) True G140567
TU176821 lncRNA upstream 183818 11107396 ~ 11107604 (-) True G140588
TU176917 lncRNA upstream 310090 11233668 ~ 11308389 (-) False G140648
AMCG00003080 mRNA downstream 6568 10907992 ~ 10912581 (-) True AMCG00003080
AMCG00003071 mRNA downstream 111416 10794054 ~ 10807733 (-) True AMCG00003071
AMCG00003069 mRNA downstream 160503 10756141 ~ 10758646 (-) True AMCG00003069
AMCG00003068 mRNA downstream 175459 10730942 ~ 10743690 (-) True AMCG00003068
AMCG00003067 mRNA downstream 218536 10694592 ~ 10700613 (-) True AMCG00003067
AMCG00003081 mRNA upstream 21441 10945019 ~ 10951437 (-) True AMCG00003081
AMCG00003079 mRNA upstream 31010 10954588 ~ 10956401 (-) True AMCG00003079
AMCG00003089 mRNA upstream 116759 11040337 ~ 11047762 (-) True AMCG00003089
AMCG00003106 mRNA upstream 214619 11138197 ~ 11166902 (-) True AMCG00003106
AMCG00003097 mRNA upstream 246962 11170540 ~ 11175031 (-) True AMCG00003097
TU176570 other downstream 587777 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1681419 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2071309 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2424553 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2980908 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 717238 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 770428 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1927443 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1927443 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1927443 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile