RNA id: AMCG00003080


Basic Information

Item Value
RNA id AMCG00003080
length 2930
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00003080
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10907992 ~ 10912581 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaaattaccCACTCTGTCTACCAACACTGTAATGACCATGATCAATGAcagtcatttgttttcctttgcaaaGGTCAAAGTCCTGTTTCAGCTTCACACAATAAATCATTAACTACCAGGCTGCCATGGTTCAAAAAGGCATTCAAAATTATCAGGACAGCTCTCACAACGGCCATTCGGAGTAAAACAATAGTAAGTATGTGAGGATGAAgactttatatatttgtttgagatttgttttcctcagaGTGGGTAGGAAGAAGTCAGCTTCTTTGGGAGGAGTCGGTGGAGTACAAAACTGCATGTCCTGTTAGAGATGGACGACCCGGAGAGAGTGTGTGGAAAACTCAGAACTGCAGAGCCCAAAGAATTCTTCCTGAGCAGGGAGAAGAACCTCTCTCTGAGTCTGCTGCTCTTGCTTGGTTGTTATGCTGCGATTCTCTATCCAGCCTATTTCCCGAAGCAACAAAACATCTGGAGAGATGACCAGCTGGAGGCGAGACGAGAAAAGTTACTGAATCACTCCGCCAGTCTGCTGTCTCGGACCTGCCGCCCGGGCTGGAGCGCAGCGAGGCTGAGAGTGGTGCACCCAGAGCAGCTGCCCACGGGGGTCCCGGTCTTTCTACAGCACTGGCAGGGTGAGTGGCGGCTGCGCCCTCCTCTGGGCCTGCTGGGCAGTGAAGAGAAGGTAGCTGGGACCCTGAGGAGCCTGCCCCAGAGAGGCCTGCCCCCCGAGCTAAGGGCTGGGGGCTGCACGCGCTGTGTGGTGGTGGGGAGCGGGGGGGTCCTGCGAGGGAGCCACATCGGGACTCGTATTGATCGGCACGACGTTATCATCAGGATGAACAATGCCCCAGTGTCTGGTTTCGAGAGGGATGCTGGCTCCAGAACCACCATCCGTCTGACTTACCCTGAGGGGGCCCCACACTCCCCTGGCGAGTACCGCAACACCTCACTGGTGGCCTTGGTTGTATTCAAGAGCTACGACCTGGACTGGCTGGCTGGGGTGGTGGCCAAGGAGCCACTGGGCTGGTGGACCAAGCTGTGGTTTTGGAAGGAAGTGGTGGAGTCCATCCCACTGCAGCCCACGAGCTTCAGGATCTTGAACCCCGAGATAGTACACGAGACAGGCCAGGCACTGCAGGGCTACTCCAACCAGCCAATCGGAATGAGCATCCCCAAGGTACCCACTCTTGGCACGTGTGCGGTTGTCATGGCACTACGGCTATGTGACGAGGTGAACCTGGCAGGGTTTGGATATGACCTTCAGCACCCCGATGCCCCTCTGCACTACTATGAATCTATACACATGGGCACCATGAAGCTACAGATTGTGCACGATGTGAGCTCGGAGAACGTGTTCCTGAGGGAGCTGGTGAGAGCCAACATAGTGCATGACCTCACAGGAGGGCTGAGCTGAGCCCTCCGTCCTGTCAGACTTATTGCTGCCCTCAATTCCTGTCTGCTAGgaattggggggaaaaaaaaagacatgttaCACAATTCTGGTATGCATACCTACAAACAAGTTTAGATGGATTACATAGATCAAGATATACACAGAGTTCCTTACAACCCCTAAACCATAGCTTTGCTCTGATCCCACTATCTTGGAGTGATACATTTGCAAACCACAATTCCTAGAGCTGTGGCGTCTAATTGCTGCTACGTGTGGATTAGCTCTTGCTCTATTCTGAAGGAATATCACAAGGCCACGGTGCATGGGGTTTAGttgttaaaacataaatagaagCTCCACAACCACAGACATGGAATGCACAGTGCCTGACCGTACGTCCCATCCATAACTTCGTCTCCGTGAAATTTATAGGTGAACTACAGGCTTTGCAGTCAGAAACCTCGAGCCGCCACTCCAgatttaaaccaaaaataaatattattatatatcatcTAATAATGACAGAAAGCCGTTGCCATTATCCGGTTGGTTTATGTAGAAGTAAAGCAATCATTcaagtaaagaaaacaatcttACCACACTAACCAATCAGAAAGCAGTGTGTCAAGATTACAGGAATCTGGAAGGAAGCTGCACCAGCTGCTTGATGACCTTGAAATTCCCTTTGTCCCCGTCATGTAAATAAAGGGGAAGGGAGAAGCAGTAACTCAAGGATTCCAAGGTATTAAATTAAGCCtagtacatattttttgtacataAAGGGTTGTTAATCTTGATAATGAAATGGCACTGTGACTAGGAAACAATTGTCTCATTAAAACACGGTGAAGTCAAAGTGAGACAGCAGACTAAGGGAAATGTCCAAGTGCTCCGCTATCCCCAGCTGGACCGTGTTTCCAGTGACCTTGTACAGAGTCTGAACTTGGAACCagagtcttcaaaatcattccAATTTAATCTCGGAAATGTATtatctttgtaatgtttttttctattgtagttcttttaaatgtaaagttaGCACCAAAATTAGCAATATTTTAGAATGCTCTACATAAAAGAACATTGAGTTGTCCATGGCTAGTGCTAATTTGCCCATAAGGTTATTGGTACGTTAAAATAAGGGCTGTACTGAAAAGAGTTACTTTACAATGAGACTGTGAGGAATTCAATAGCTGGTCTGAAAATAGTCATCTGACTGCACTGCAATCAAGGGCAGTATTTAGATAACTGATATTGAAACAGTGACGCTCAGATACCTATCAATTTAATAAACTCGAACCATGTATCAATCACCAGCTAGAGTGTAGTACAGGACTATACAATTTTGACCATATTCTGAACCTTGCTTATAACTAAGACATTCAAAACTtaaacagcaaaagaaaaagcttttgaaaatgtacagcattaACTAATTGTAtactgtctgtttttttgtattgtttattatattaaataattcaaatttgcAGTCAGTGTGCCAAAGTCTCATTTTTAAGTTGCTG

Function

GO:

id name namespace
GO:0043412 macromolecule modification biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176739 lncRNA downstream 88833 10818769 ~ 10819159 (-) True G140521
TU176659 lncRNA downstream 250995 10653325 ~ 10656997 (-) True G140458
TU176655 lncRNA downstream 284250 10622606 ~ 10623742 (-) True G140456
TU176545 lncRNA downstream 568732 10221780 ~ 10339260 (-) True G140368
TU176422 lncRNA downstream 870135 10036178 ~ 10037857 (-) True G140279
TU176757 lncRNA upstream 13537 10926118 ~ 10929972 (-) True G140537
TU176774 lncRNA upstream 52951 10965532 ~ 10967602 (-) True G140546
TU176798 lncRNA upstream 98557 11011138 ~ 11037311 (-) True G140567
TU176821 lncRNA upstream 194815 11107396 ~ 11107604 (-) True G140588
TU176917 lncRNA upstream 321087 11233668 ~ 11308389 (-) False G140648
AMCG00003071 mRNA downstream 100259 10794054 ~ 10807733 (-) True AMCG00003071
AMCG00003069 mRNA downstream 149346 10756141 ~ 10758646 (-) True AMCG00003069
AMCG00003068 mRNA downstream 164302 10730942 ~ 10743690 (-) True AMCG00003068
AMCG00003067 mRNA downstream 207379 10694592 ~ 10700613 (-) True AMCG00003067
AMCG00003061 mRNA downstream 228160 10670505 ~ 10679832 (-) True AMCG00003061
AMCG00003078 mRNA upstream 6568 10919149 ~ 10923578 (-) True AMCG00003078
AMCG00003081 mRNA upstream 32438 10945019 ~ 10951437 (-) True AMCG00003081
AMCG00003079 mRNA upstream 42007 10954588 ~ 10956401 (-) True AMCG00003079
AMCG00003089 mRNA upstream 127756 11040337 ~ 11047762 (-) True AMCG00003089
AMCG00003106 mRNA upstream 225616 11138197 ~ 11166902 (-) True AMCG00003106
TU176570 other downstream 576620 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1670262 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2060152 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2413396 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2969751 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 728235 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 781425 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1938440 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1938440 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1938440 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile