RNA id: AMCG00003081


Basic Information

Item Value
RNA id AMCG00003081
length 477
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00003081
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10945019 ~ 10951437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCAAGGCCGTATGCGATTGCGACCCTGGCTGGAGGAACAAATCAGATCCCAAAAGTATCCTGGTGTTACCTGGCTTGATGAAACTGCGGGAGTATTTCAGATCCCGTGGAAACATGCAGCTCGTCACGGCTGGAATATAGATAAAGACGCCACTCTGTTCCGAAACTGGGCAATGCACACAGGTAAGGAGACAAGCCTGGACCTTACTACATGGAAAGCCAACTTCAGATGTGCTCTGAATTCCCTGCCAGACGTGAAGGAACTGCACGACAAGAGCATCAAGAAGGGGCACAATGCCTTCAGAGTCTACATGATGCTCCCCTCCATGAAAGCCCCCAAACGAAAGAGAGATGACGGGGTCGGCTTCTCAGGAACTTCGATGCAGGCCGACTACTCAGTGTGCAACGAGGAGCAACGGCCCTATATCCCGGAGCACTTGCGCACACATGCCAACATGATTTTCCACAAGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176757 lncRNA downstream 15047 10926118 ~ 10929972 (-) True G140537
TU176739 lncRNA downstream 125860 10818769 ~ 10819159 (-) True G140521
TU176659 lncRNA downstream 288022 10653325 ~ 10656997 (-) True G140458
TU176655 lncRNA downstream 321277 10622606 ~ 10623742 (-) True G140456
TU176545 lncRNA downstream 605759 10221780 ~ 10339260 (-) True G140368
TU176774 lncRNA upstream 14095 10965532 ~ 10967602 (-) True G140546
TU176798 lncRNA upstream 59701 11011138 ~ 11037311 (-) True G140567
TU176821 lncRNA upstream 155959 11107396 ~ 11107604 (-) True G140588
TU176917 lncRNA upstream 282231 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA upstream 354034 11305471 ~ 11308389 (-) True G140648
AMCG00003078 mRNA downstream 21441 10919149 ~ 10923578 (-) True AMCG00003078
AMCG00003080 mRNA downstream 32438 10907992 ~ 10912581 (-) True AMCG00003080
AMCG00003071 mRNA downstream 137286 10794054 ~ 10807733 (-) True AMCG00003071
AMCG00003069 mRNA downstream 186373 10756141 ~ 10758646 (-) True AMCG00003069
AMCG00003068 mRNA downstream 201329 10730942 ~ 10743690 (-) True AMCG00003068
AMCG00003079 mRNA upstream 3151 10954588 ~ 10956401 (-) True AMCG00003079
AMCG00003089 mRNA upstream 88900 11040337 ~ 11047762 (-) True AMCG00003089
AMCG00003106 mRNA upstream 186760 11138197 ~ 11166902 (-) True AMCG00003106
AMCG00003097 mRNA upstream 219103 11170540 ~ 11175031 (-) True AMCG00003097
AMCG00003104 mRNA upstream 256036 11207473 ~ 11224433 (-) True AMCG00003104
TU176570 other downstream 613647 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1707289 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2097179 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2450423 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3006778 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 689379 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 742569 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1899584 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1899584 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1899584 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile