RNA id: AMCG00003083


Basic Information

Item Value
RNA id AMCG00003083
length 3299
RNA type mRNA
GC content 0.39
exon number 9
gene id AMCG00003083
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10986126 ~ 10994512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCAAAAGAGGAACTGTCACATGACTGTGGACGGCGCTGCTCGGCGGGTCACATGACCAAAGAAGCAGGAGTTTAGGGAGGATTGCAGAGGGATCAGAGTTACGGAGATTCGTTGTGGAAACGGGCTGAAATGAGTTTCCTTGGGGGTTTGTTTGGTCCAGTGTGTGAAATCGATGTTATCCTCAATGATGCCGACACCAGGAAGACGGCCGAGATCAAGACTGAAGATGGCAAAGTGGAAAAGCATTTCCTGTTCTATGACGGAGAATCTGTTTCAGGGAAGGTGAACCTCACTGTGaaacagacagggaagagattaGAGCATCTGGGTATTCACATTGAATTTGTGGGACAGATTGAGCTGTTCAGTGACAAGAGCAACACTCATGAGTTTGTAAACCTGGTAAAGGAGCTGGCCCTGCCGGGGGAGCTGACGCAGAACCGGAGCTACGACTTTGAGTTCATGCAGGTTGAGAAGCCTTACGAGTCTTACATTGGAGCCAACGTGAGGCTCAGGTATTTTCTTAAAGTGACTATAGTGAGAAGACTGTCGGACCTGGTCAAGGAGTATGACCTCATTGTTCACCAGCTTGCTACGTACCCTGATGTGAATAATTCCATCAAGATGGAAGTGGGGATTGAGGACTGCCTACACATAGAGTTTGAATACAACAAGTCAAAGTACCACTTAAAAGATGTAATTGTGGGCAAAATATACTTCCTGTTAGTGAGAATTAAGATCCAGCACATGGAGCTACAGCTGATCAAGAAAGAGATCACCGGCATTGGACCCAGTACaactacagaaacagaaacaattgCCAAGTATGAAATCATGGATGGTGCTCCAGTGAAAGGGGAGTCCATCCCCATCAGACTCTTTCTGGCCGGCTATGACCTCACCCCAACCATGAGAGATGTGAACAAGAAGTTCTCCGTGCGGTACTTCCTCAACCTGGTTCTGGTAGACGAAGAGGACAGACGATACTTCAAACAGCAGgAGATCGTCCTGTGGAGAAAGGCTCCAGAGAAACTGAGGAAACGCAATTTCCACCAGCGCTATGAGTCTCCCGAGCCGCGGCCCACCCTGTCGGCTGAGCAGCCTGAAATGTGAAGAGCCTGAAAAGTAGGAAAAGTGAGCATGGCGGTTTCCACTCGGCAGCAAACTGGAAGAGAGCGAAAAAGAAAAACgacaaacaaaaagagagagagagcgagagcggcCAAACACCACCAACCCCACGTCTCACGGTCTTCCTTCCATGCGACACTGCAGCGCTCGCTCTGCCACCCCACTACGCATCCCGCGAGTGTCTGCAGACTCTCGATGTgagaaacacaacaacaaacactggAATACTCTGAAGCGCCCATTTCTTTTATACCACACATTTTACACACTTTCATTAACTTAATGCACTTGGATATGCaagaagtttaaaacaaaatgagaaagcgggaaaaaaaaaaacacacaaaaaaataacttatGTATTTCAACGAATGTTCCCATGCATGTAGGTTTGTTAATTTATATGGATAAATGACATGAAAATTGTTAGGTGTGGGCTTCAGGACCTGTCTTTAGAAACACTAAGGGACGAGGCATATGTGACCCCTGAATGCCATATACTTAATCCACTGTAAGATGTATAAGATTTATATCGGAGACTGTCTcctcaattatgtaattatttttgtctgattcacaccatttatttttgtttgttttccatgtaaCCGAATACTTTGTTACATACATTGAGGTATCTTTCTTCTATATTTTCCTCAATATAGGAAAATCTATGTTGGAACTATTGCTGTTACAAGAGGCTGTGAGAAAACTTtgattttccaaaaacaaaagtttggAGCCCTTTAGACTGAACAATTAAATGGGCTTTTAACAGTTCTCAATCTAAAATCAGGGGTATAAATAGGCCTACAGTggttggattttattttagttaatataaatataaattcccTTTAATTTTCTAGATTTTACACCTGTAACTTCTTCTGGTGGTACTGTATACAGGGAATTTcaactattgtgtgtgtgtgtgtgttagtagAAGGAAAATGGTTTTGGGAAGCTAACTGCACGTTGTATAAAATGCACAAGAGCTCGGAGCAGAATGGGCCACTTTCTTGTCACAGTTCACTGCACAGTCCTTCAGTTGCTGGTGACCATACACAGGCAATTTCCATTCCCTTTTTGTTGTATGTAAGTGCCTGtaaggaaatgaaaatgtatgccAAATATTGTCCTGGCCACGTGCATGATTTTCCCCTTTTTACAAtgcctaattaaaaaaaaaaaagacatttgcaagcattaaatactgtacatatcCAGCCTCAGACTATTTATCCATGTacaataaaagtttaaaatttcTACTGGTATTCTTACCATGTTCTGTCATTCTAAAGCcgttttgtttaagaaaaaaatcataatgtatATTGGAAAGAAACAGTACTTAATATTTTAGAATATGTATCTCAACATATGAATCTATATCAGTtagatttgtaattaaaaaataaactatttttaaaatgtcatataaATCAGAAAGTGGAAAATAAGAGTTGTATATGAAATGTTCATTTCAATCAGATAAAACTGGTTCCACATCATGTttgatttctaaattaaaactagttttctgattgttttctgTACAGGGTTTcatctattttgtatttctccCCTTTTAGTTAAAACGCAAATCTAGGAAGATAATTTCTGTCATACTGTAGGGAATGCAGGTTGTTGTATTTGAGAGTGTATTTGATGGTGTAAGGTTATCGCACAATAACCTTTATCAAGTCATTCTTGTATGCATTGCTCAGACGTTTAAAGTGCGTAACCCTGTTTAAAGTGAAATTGTGAAAAggatacaacaacaacagtttGTAAAGACATTATACTGTAGgatgaatatttaaatttgaattaagGAGCTGGTTGTACCAAATATGTGCATTGAAATGGATCACTTGGGTTTTGTTTGGAATACCCCTGCTGTGTGTGATACACAATTTTGTAACCTTGGACAGAATTATTGTTGTGTTAGTTCACTGCTGGCAGACCAAAGCATAACCAGTCCGTTCCAGATGTGACCTCTTACTGAACAATATTCAGCCTTTCCATCATCTAAGGCAAATCCATTAATCTGTGTAATCTAACATTAGATGTGTGATACAGATCTTTTTTATTGGTTACTTTTCATGCATTGTTCAGAAGAGTTTATTCTAAATAAAACGTTaattgaacaaatacaaa

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0010008 endosome membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0030904 retromer complex cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 302514 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 329135 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 353637 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 358244 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 696191 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 212994 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 250744 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 486293 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 493718 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 543135 11537647 ~ 11537954 (+) True G140723
AMCG00003082 mRNA upstream 3963 10973489 ~ 10982163 (+) True AMCG00003082
AMCG00003086 mRNA upstream 18698 10963206 ~ 10967428 (+) True AMCG00003086
AMCG00003084 mRNA upstream 24633 10959979 ~ 10961493 (+) True AMCG00003084
AMCG00003072 mRNA upstream 44542 10922596 ~ 10941584 (+) True AMCG00003072
AMCG00003074 mRNA upstream 68082 10915617 ~ 10918044 (+) True AMCG00003074
AMCG00003087 mRNA downstream 793 10995305 ~ 11002093 (+) True AMCG00003087
AMCG00003088 mRNA downstream 9451 11003963 ~ 11015125 (+) True AMCG00003088
AMCG00003085 mRNA downstream 24530 11019042 ~ 11039328 (+) True AMCG00003085
AMCG00003092 mRNA downstream 58475 11052987 ~ 11105353 (+) True AMCG00003092
AMCG00003091 mRNA downstream 124453 11118965 ~ 11139826 (+) True AMCG00003091
TU176681 other upstream 229286 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1205674 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1655662 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1681286 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2941906 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 215061 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 491679 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1379454 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1736219 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1884173 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile