RNA id: AMCG00003084



Basic Information


Item Value
RNA id AMCG00003084
length 1128
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00003084
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10959979 ~ 10961493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGCCCAGAGAACGCATGCGCAAGCACAAGTTCACAGAAGCAGAATTGGCAATCTTAATCGAAGAAGTAACACACAAAGAAGACATCTTGTTTGGCTTGCAGGGTAATGGCATGACAACTTacgaaaaaaataagttatggGTCGACATAGCACACAGACTTTATGCAACATCTGGCATGCAGCGTACAGTCAGTGAGATAAAAAGAAGGTGGCAAGACCTGAAACGGAGAACCAGGCAGAAAGTTGAAGATGCtaaatttcatatttcaaaaaacAGCCCTTCCTCATCACTATACCTAACAGCCATGGAGCAGAAAGTGTACGAATCCCTCAATATCCACACCATtgtgaaagaagaagaagacgatATTTTGCAGACCTCTCCTCATGAAGCCttctattcatattatttatttctagagACATTTCAGACTACAGAAACTGGGTCACCAGAAGCATATGAAGAGCCTTCAGACTTACAGATTTATACCCATCAAAGCACTTCAGGTGTCCTTCAAACACCACAGACCTACACAGAGCAATCCAGCTGTAGCCCATTTATAAACCAAGAAATCTCTAATGAAGAGCATAGCAGGCATCCATTGTGTAACAAAGCACAGATTGCACCAAGCCAGGGGTCTCCAGCCAGTGAGACGGTGCAGGGCTCCTTTCCTGGGCTGAGAGGCCCTCTGAAGGTCCAGAGCCTGTCGAGCTCCAGCAAGATCATGTCATTGGGGTCCTTTGAGCAGCAGCTCCTCAGGGCTCACCGTGAGCAAACGGCCGCTCTGAAGGATGGCTTCCGCACCCTGACCAGGCAAAACAGACTCATCTACAGAGAGATGTGTGAGACCAATAAGAACATCGCCCGCATCGCCTCCCGCATCGCCGAGAAGAACGAGGCGGTGTCTGACCTGGCTGAGGAACTCATGGGCATCCATCACAAGATCACCGAGAGCATCGATGCCACCAACTGCCTCCAGGACAGGGTGATCGACCTGCTGGCGACGCAGCAGGAACgctctgtttttgttgtgccCAGTGCTGTTAAAGACCCTGTGCCTGCTGCCTCCGTGACACAGCACGAGAACACTGCCCGGAAAGAGGAGGCAATCTTGCATGGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 276367 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 302988 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 327490 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 332097 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 670044 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 246013 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 283763 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 519312 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 526737 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 576154 11537647 ~ 11537954 (+) True G140723
AMCG00003072 mRNA upstream 18395 10922596 ~ 10941584 (+) True AMCG00003072
AMCG00003074 mRNA upstream 41935 10915617 ~ 10918044 (+) True AMCG00003074
AMCG00003073 mRNA upstream 52269 10900815 ~ 10907710 (+) True AMCG00003073
AMCG00003077 mRNA upstream 78149 10866639 ~ 10881830 (+) True AMCG00003077
AMCG00003076 mRNA upstream 97863 10860698 ~ 10862116 (+) True AMCG00003076
AMCG00003086 mRNA downstream 1713 10963206 ~ 10967428 (+) True AMCG00003086
AMCG00003082 mRNA downstream 11996 10973489 ~ 10982163 (+) True AMCG00003082
AMCG00003083 mRNA downstream 24633 10986126 ~ 10994512 (+) True AMCG00003083
AMCG00003087 mRNA downstream 33812 10995305 ~ 11002093 (+) True AMCG00003087
AMCG00003088 mRNA downstream 42470 11003963 ~ 11015125 (+) True AMCG00003088
TU176681 other upstream 203139 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1179527 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1629515 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1655139 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2915759 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 248080 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 524698 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1412473 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1769238 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1917192 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile