RNA id: AMCG00003086


Basic Information

Item Value
RNA id AMCG00003086
length 2427
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00003086
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10963206 ~ 10967428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAGCATCACATATTGTGCCGTAATCGATCTCAGCGTCGCCGAGTGCGCCTGCGCTgaccaagatggctgcctctatGAGCCCAGAGGAGAGATCTCTGTGCGAAAAATACAGCCGTGCAATCACGCTGTCTGAGGTCGAGTCCCGGAAGGACCCGGAGAACGACCCCTTCTGCTCCAAATACAAAGCCAGGGAGCTCCTGAAGGAGATACACAGCACCCTGCGGAACCTGTATGCTGGCGAGCATGACACCGACGAAGGGGATGGGGAGCAGCCGCTGGACGGGGCAGAAGGAGAGCTCGGCGGCAGCGCCTGCTCCGGGGATTCTCCAGCCGGCCTCCAAGCAGCCAGGCTGGGGGTGATTGAATATCATCTGGGGGTGAACCATGTGGAGACCGAGGAGCTGTCTGCCGGAGAGGAACATTTGATGAATTGTATCAAACTGCTGGATAAATACACCATCTCCCAGGAGAACATCTCTGTCTTCATACAGGCCAGGAACCAGCTGGGCATCCTATGGGCTGGCCGGGATGAAATCGAGAAGGCGCAGGGCTTTCTGGAGACGGCAGAGTCTCTGTACATACGCTACATGAAAGAGGATGGACAGCCTCCAATGGATCTCAGTGACTTCTTTCTGGCAGAAGAGGAAAAGCTGTCTGAACAAGAACGAACAAAGAGATTTGAGATGGCGCACACGTACACGCTGTACTACCTGGCACAGGTCTACAAGAACCTGGAGCAGTTTGAGAAAGCGGGCCGGTACTGCCACACCACTCTGCAGAGACAGCTGGAGTTCAACCACTTTGTTCCACTCGAATGGGCCATCAATGCTGCCACGTTGTCACAGTATTACATCACTAAGTCCTGTTACATGGAAGGCCGGCACTGCTTAGCGGCTGCCCTGGTCGTTGCTGGTCTTGCAGGGGAAGTTCCTTCAGAAGCTGCTGCTCAGGAGAGTGAGACGGAAAGCGAGAAGCGTGAGCAGCTCCGTCAGAAGAGAGCAGAAATCGCCAGGTGCTGGATCAAATATTGCCTGAATCTTCTGCAAGATGCCAAAAAACTTCTAGAGGACAACATCGGTGAGCTGGACGTGGAACGGCAGGTGGAGCAGAAAGCACGACGGAGGgaacaggaggaggagaaggagaaaggcTTGAAGAGTGCCATTCTATTTGGTTCCAGCGACACATATGATTCGATTTTGGCGCTGGAAGAGAAGGTGAGCTGCATCTACCCTCTAGATTTTGAGGAAGCCCGAGCCATCTTCTTGGTGGGGCAGAACTACGTCAACGAGGCCAAGGAATACTTTGAGATGGACGGCCACGTCACGGATCACATCGAGGTGCTCCAAGACCACAGCGCCCTGTTCAAGGCCCTGTCGTTCTTCGAGGAGGACTGCGAGAGGCGCTGCAAGATGCACAAGCGCCGCATCGACATGCTGGAGCCCATCTGCCTAGACCTCAACGCGCAGTACTACCTCCTCATCTGCCGGCAGCTTCAGTTCGAGCTGGCCGAGACCTATTACGAGATGATGGATCTGAAGCTGGTGGTGGCCAACAAGCAGGACGAACTGGACGCGCACACCATCAAGAAGTTCAACCACCTCTGCATGTCCTCCATCAAGTACTACAAGATGTTCCTGGACTCCGTCAAGACGCCGGATGGCAAGTTCCCAGACAAGCTGGAAGATGATGTTTTGCGTCCGGCGCTCGTTGCCAAGTTCCGCATCGCCCGTCTATACAGCAGGATCATCTCCCCCGACTCCGGCAAGCAGCTGGAGAACCTCAACAAGTCCCTGGAGTGCTACTGCTTTGTGGTGGAGTATTGCGAGCGCAACCCCGAGGCCAAGAAGGCGGTGGAGACGGAGCTGGAGCTTAGCGAAGAGATGTCCGGCCTCCTCCCTCTCAAAATCGAGcgcctgaaaatgaaaatggtttcCTCGAACTGATTGACCGACTTCTGAACaatgaaaaattaatacatgaataaaaagcCTTCTATACCTTCTGTCATGTACATTTCCCCCCCCTGTAACACTAACTTAAAATATTGTTGTAGTCCTTTGAATGCTGAAGGAAACTAGCAGCAGATTTGGTTGTCACTGGCACAAATGGATTTATACAATGAAATATAACTTAATTGGAGGGCTCTTGTCTAgccttgtttaatttatttgctgattttaaaaatgtatgttttgtttacaaatggtaaattaggcctatattttaaagtaaaatgatttGTGACTCCATGGGTTTCTGATAGTATTCCACAGTAAATATACCTTGAATGTGCTTCTGCCAATGGTTGTCCTTACCTGCCTTTatctgctgtttatttatgcTCTTCTGAATGCTTACTATTAATAtagtgttcatttaaaaaaataattaaatatcaataaaaactaTAACTTGGGTGAGA

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0048929 efferent axon development in posterior lateral line nerve biological_process
GO:0006839 mitochondrial transport biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K23845 KIFBP; KIF-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 279594 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 306215 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 330717 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 335324 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 673271 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 240078 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 277828 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 513377 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 520802 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 570219 11537647 ~ 11537954 (+) True G140723
AMCG00003084 mRNA upstream 1713 10959979 ~ 10961493 (+) True AMCG00003084
AMCG00003072 mRNA upstream 21622 10922596 ~ 10941584 (+) True AMCG00003072
AMCG00003074 mRNA upstream 45162 10915617 ~ 10918044 (+) True AMCG00003074
AMCG00003073 mRNA upstream 55496 10900815 ~ 10907710 (+) True AMCG00003073
AMCG00003077 mRNA upstream 81376 10866639 ~ 10881830 (+) True AMCG00003077
AMCG00003082 mRNA downstream 6061 10973489 ~ 10982163 (+) True AMCG00003082
AMCG00003083 mRNA downstream 18698 10986126 ~ 10994512 (+) True AMCG00003083
AMCG00003087 mRNA downstream 27877 10995305 ~ 11002093 (+) True AMCG00003087
AMCG00003088 mRNA downstream 36535 11003963 ~ 11015125 (+) True AMCG00003088
AMCG00003085 mRNA downstream 51614 11019042 ~ 11039328 (+) True AMCG00003085
TU176681 other upstream 206366 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1182754 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1632742 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1658366 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2918986 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 242145 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 518763 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1406538 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1763303 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1911257 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile