RNA id: AMCG00003088


Basic Information

Item Value
RNA id AMCG00003088
length 4083
RNA type mRNA
GC content 0.48
exon number 19
gene id AMCG00003088
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11003963 ~ 11015125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCAAGTGAGTCATTAATTATTGAGCCATCAGAGGGGTGGGCTTTACCAACATTGCCACtgaggaaaaacattttcaagcaTGAAAACTTTCATTTGGCCTCACAAGGAGTCTGCTTCCTTCAGAGAGTAAAGTGGAgtctaattaagaaaacaacCAGCAGAACTAGAAGGGCCCaacgggggagagagagacggggagaacTTGGACTTATTTGAAAACCTGCTTGAGGAAACTTATCAGGACTCAAGATGTTTGCTGTACATTTGCTCTCCTTCTACTTCTCAAAACTTCAGGAAGACCAGATCAAAAAGGTGGACAGGTTTCTGTACGCCATGCGGCTTTCTGATGACCAGTTGCTGGACATTGCGGCACGCTTCCAGGCAGAGATGGAGAAGGGCCTGTCTGCTGAGAGCAACCCAACAGCGGCCTTGAAGATGCTGCCCACACATGTCCGCTCAACACCTGACACCTCAGAGAAGGGGGAGTTTCTGGCTCTGGACCTGGGGGGCTCCAAGTTCAAAGTGCTGCAGGTGAAGGTGTCTGAAGATGGGAAGAAGAGAGTGGAAATGGAGAGCAAGATGTACCCCAATCCTGAGGAGATCCTCAGTGGCAAAGGGACAGATCTCTTTGACTATGTAGCTGCATGTCTGAAGGATTTCATGCAGAGCAAACACATCAATCAGAAGAAACAGCCCCTGGGTTTCACTTTCTCCTTCCCCTGTAGACAGTCAACAGTGGATGAGGGTGTCCTGCTGTCATGGTCAAAGCACTTCAAGGCCAGGGGGGTtcaaggcaaagacgtggtgAACTTGCTACGGAAAGCTATTGACAGAGCTGGGGGAATTGATGTGGATGTCTTGGCCCTAGTTAACGACACAGTGGGAACCATGATGACATGTGGATATGATGACCAGCACTGTGAAGTTGGAGTCATTATAGGTACCGGCACCAACGCGTGCTACATGGAGGAGTTGAGACACATTGACCTGGTGGAGGGGGACGAGGGCAGGATGTGCATCAACACCGAGTGGGGCGCGTTTGGGGACGACGGCTCGCTCGATGACTTCATTACTGACTTTGACAGAGAAATCGATGCCGCGTCCATCAACCCAGGGAAGCAGCTGTTTGAGAAGATGATCAGTGGGCTGTATCTGGGTGAGCTTGTGAGACTAATTCTGCTGAAGATGACCAAGAAAGGCTTGCTCTTCAAAGGCCGCGCTTCAGACGCACTGCGCACCAAAGGAAAATTCGAGACCCGACACATTTCTGCAATTGAGAAATACAAGGAGGGTTTGAACAACACCAGAGAGATCCTGACTGCCCTTGGGCTTCAGCCCTCGGAGGATGACTGCATTGCAGTCCAGCACGTCTGCACCATCGTTTCCTTCAGATCTGCCAACCTCTGCGCTGCCGCCCTATCGGCCATACTCGCCCGCATCCGGGAGAACAAGAAAGTCAGTCGCCTGAGGACCACGGTGGGGGTGGATGGGACTGTCTACAGAACTCATCCTCAatatGCCAAGCGGCTGCACAAGGTAGTGCGCCGGCTGGTGCCAGACTGCCACGTGCGCTTCGTGCTCTCAGAGAGCGGCAGTGGGAAGGGCGCTGCCATGGTGACAGCGGTGGCACAGAGACTGGTGTCCCAGCGCAAGCAGATTGACCAGACCCTGGTCCCCTTCTTGCTCAGCCGGCAGCAGCTgcaacaggtcagggacaagatGAGGGTGGAGCTGGAGCGTGGCttgaaaaaagacacacaccACACGGCCTCTGTCAAGATGCTGCCCTCATACGTGTACAGGACTCCCGACGGGACGGAAGGTGGAAAGTTTCTTGCGCTGGACCTGGGAGGAACCAATTTCCGGGTACTGGTTGTGAAAATCCGCAGTGGTTTACGCAGATCAGTCCGGATGTACAACAAGATCTATGCCATCCCATTGGAAATCATGCAAGGGACTGGGGAAGAGCTCTTCGATCACATCGTTCACTGCATTTCGGATTTCCTTGACTACATGGGCATGAAAAACACCATGCTACCTCTTGGATTTACGTTCTCTTTTCCCTGTAGACAGACTGGGATTGACAAGGGAACTCTTGTTAACTGGACCAAAGGTTTTAAAGCCACAGACTGTGAAGGTCACGATGTGGTGGACATGTTAAGGGAAGCCATCAAACGAAGGAATGAGTTTGATCTGGacattgttgctgttgtgaaTGACACCGTGGGAACTATGATGACCTGTGCTTATGAAGACCCTCAGTGCGAAATCGGGCTGATCGCCGGAACAGGAAGCAATGTCTGTTACATGGAGGAGATGAGGAATATCGAGACTGTGGAGGGAGATGAGGGGCGGATGTGTGTGAACACTGAATGGGGTGGATTTGGAGAAAACGGTTGCATTGAAGATATAAGAACAAAATTTGACCGAGAGGTGGATGAAGGGTCTTTGAACATAGGCAAACAACGGTTTGAGAAGATGACCAGTGGCATGTACCTGGGGGAGATCGTGAGGCAGATCCTCATCGATCTGACGAGACGAGGCCTGCTGTTCCGAGGTCGCGTCACAGAGCGCCTCAAGACCAGGGGGATCTTCGAGACCAAGTTCCTGTCTCAGATTGAAAGTGACCGGCTGGCGCTGCTCCAGGTGAGAGCCATCCTGCAGCAGCTGGGTCTGGACGGCACATGTGATGACAGCATCATTGTGAAGGAGGTGTGCAGCACGGTCTCACGCAGGGCGGCACAGTTATGTGGCGCTGGCATGGCCGCTGTGGTGGACAAGATCCGGGAAAACAGAGGGCTGGACAAGCTGGACATCACCGTGGGGGTTGATGGCACGCTGTATAAACTGCACCCACACTTCTCCAGTATACTGAAGGAGACTGTGCAGGATCTCGCACCCCAGTGTGAGGTCAACTTCGTCCTCTCGGAAGACGGGAGTGGGAAAGGGGCAGCCCTCATCACAGCGGTGGCGCGCAAATATAAAGAACCTCTTCGTCCTGCtgtctgacacccctgctctcTGAAATTGCATTAACTGTACAATGAAttccaaatgtatttctgtCTTCAAGCTCCAATGCACAGGACCTCTAACATTCGGGTCAATTGATTCCCCAGTGTCTTATATATGCATGTAATGGAAAATGCTGAATTGTCTGAACCAGCGCTGTAGTGGGGACTGAAGAGGTGGGTATACTCTAATACCAACCAGGGGTGTTGGGGGCGGGTGTGATGCTGGCAATATGTCGACCGGGGGGGGAAGTGTCTGAATTAATAAGGTATAGAAGGCTATATGCAAAATCACATTAGGTGGGCATACACAAAGTTCTCCTCATATTAGGTGGGCATACCGCGTATATCTGTGTCAAATATGCAgaaccttttattattattattattatttgcattaaattaaattaagagtaGCAACAAAAGGAGTTTCATATTGAAGCTACTGTTCACTCATTCATAGTTGTCATTAAATGGAACAAAATGAAAGGTAatcttttgaaataattaaatcaaagtgcAGTTTGTTAAGtcttaatataattaatactaTGTATTTGTAggtgtgttttttcattcttgGACATCAAGGGTTTTATTGTCCTGTTGATCTCTCTTCTTCAACAGGTTCTCATGCTATCACATTTTTGTTCCTTTCTACAAAGAGTATCTTTTTAGGTTGCTGTCTTGGTAAAATACAGGATACCTGCACACTGAAAGACTTGCAGCGGAACAAATGCTAAGGACTGACTTGCAGATAAGATAATCTTCTAGAATACATCTCCCCAGCAATGGAAAGCGATGAAGAGGTTCCACCACATGTATGTACAGTGCAGGTGTTTATTAGTTTAATAGGGCTGTTTGTAAAAAGTAGCTTCACTTGTAGGTTaaagatctatatatatatatttccagtaTTACTGTATTTGCAGGTGATACAGTAGTTATGTTAGTTCTTGaggttacatttaaatgttactttGAGTAAGGGGCTAGAggttacttgtatttatttataaatatactaaaTAGCCTTTTTCtattatacacatttacattgattgttgaaa

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176631 lncRNA upstream 320351 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 346972 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 371474 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 376081 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 714028 10288437 ~ 10289935 (+) True G140351
TU176865 lncRNA downstream 192381 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 230131 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 465680 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 473105 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 522522 11537647 ~ 11537954 (+) True G140723
AMCG00003087 mRNA upstream 1870 10995305 ~ 11002093 (+) True AMCG00003087
AMCG00003083 mRNA upstream 9451 10986126 ~ 10994512 (+) True AMCG00003083
AMCG00003082 mRNA upstream 21800 10973489 ~ 10982163 (+) True AMCG00003082
AMCG00003086 mRNA upstream 36535 10963206 ~ 10967428 (+) True AMCG00003086
AMCG00003084 mRNA upstream 42470 10959979 ~ 10961493 (+) True AMCG00003084
AMCG00003085 mRNA downstream 3917 11019042 ~ 11039328 (+) True AMCG00003085
AMCG00003092 mRNA downstream 37862 11052987 ~ 11105353 (+) True AMCG00003092
AMCG00003091 mRNA downstream 103840 11118965 ~ 11139826 (+) True AMCG00003091
AMCG00003090 mRNA downstream 131463 11146588 ~ 11154101 (+) True AMCG00003090
AMCG00003096 mRNA downstream 218323 11233448 ~ 11239304 (+) True AMCG00003096
TU176681 other upstream 247123 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1223511 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1673499 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1699123 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2959743 8037577 ~ 8044220 (+) True AMCG00002965
TU176867 other downstream 194448 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 471066 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1358841 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1715606 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1863560 12878685 ~ 12882998 (+) True AMCG00003141

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_13404454_13437477.mRNA True 7080 mRNA 0.46 48 CI01000012 13404454 ~ 13437722 (+)