RNA id: AMCG00003094


Basic Information

Item Value
RNA id AMCG00003094
length 3102
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00003094
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11300317 ~ 11307482 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGGAAGGACACGGTCCGTTacccaaagcatgccctgctcGCTGTGGCAACATTAACCAGCTGCCGGGAGGAGGACCCTGTTATCTTTACAAAAGCAGGGAAGGCAGGGTGGGTTGATCAGGGCTGTGTAATTGGTTGTATCGGTAAGCCGACAGGAAACGGCGAACACGTTGTGCAACCGCAACCCGGCGCTGACAGCTGACCTTGCATATTGTATGGAAAAGGCGAGTAGGAGCTTCATAGCATGTTGGCATTAACAACATAAACCTTTGAACAGCGTGAAGGTGGCATGGCACGGAGAAGGAAGTACTAAGGACATGGATCTATGAACACCCAAAGCAATTTCAGAAATGGCTACTGAGGCATCTGTTTCAGCCACCGCTCGGACGGGGATGCCCAGTTCAAGTCGGAAAGACTATTACTGGATCCGCTCCTTTGTCGCCGGAGGTGTGGCAGGATGCTGTGCCAAAAGTACTATTGCACCTCTTGACAGAGTGAAGATTttattacaggctcaaaatccCCATTACAGTCATCTTGGAGTGTTTGAGACACTCTGCGCTGTGCCAAAGAAGGAGGGATATCTTGGCTTATACAAAGGAAATGGAGCCATGATGGTCAGAATATTTCCATATGGAGCCATTCAGTTCATGTCCTTTgacaattacaaaaaaTTCCTGAACAAAAAGTTAGGCATCTCTGGACATGTTCATCGGTTAATGGCTGGATCTATGGCAGGGATGACGGCAGTAATTTGCACATACCCACTGGATGTGATCCGAGCCCGACTTGCATTTCAAGTTAAAGGGGAACACGGATACACTGGAATTGCCAACGCTTTTCAGACCATCTACAAGCATgAAGGGGGTGTCAAAGGCTTTTATAGAGGTTTAACGCCCACCCTCATAGGGATGGCACCGTATGCAGGCTTCTCCTTTTTTACCTTTGGCACACTGAAAAGCCTGGGCCTCGCTCACGCTCCTGAGCTCCTGGGAAAGCCATCGTCCGACAATCCAGATGTCTTAGTTCTGAAAGCTCACGTGAACCTGCTTTGTGGAGGGATAGCTGGAGCAATTGCACAGACTATTTCATATCCGCTGGACGTGGCTCGCCGTAGGATGCAGTTAGGAACAATCCTTCCAGACTCTGAAAAGTGTCTTACTTTGACCAAGACCCTGAAGTATGTGTACACCAAATATGGAGTAAAAGGAGGACTTTATCGTGGTCTGTCTCTGAACTACATCCGCTGTGTGCCCTCCCAAGCTGTGGCCTTCACCACTTATGAGCTCATGAAGCAGGTGCTGCACCTCAATTGATCACCGATTTCCCAGAAACCAAGGAACCCCCAATTCTGTTGAGAGTGAGGCCAAGAAACCTCCCTTTGGCTTTATTACCCCTAATGCAGAATGATTGTGCCATTGCTGTAAAATCACCTTAACAAGAAGCATGTACTCGGTTATTTTGAATTGCCCTGATTTCTGTGGCATAGACTGGACTCTTATACActgaattgattatttttatatgtatagggtttccttttatttattctctacAAGGAAGCGAGTGTTTGAGTGGCACTGTGCTATAAGCTACCAGGTGAAATCTGTGGTTAGCTTTACCATCTACAATTTGTACGTTTTTAGGTATGTAGTGCTTTGATTTCTGTGTTGCTGGGCCACCACCTTCTACACTAACTAGTGGGGAAATGAAAATGAGGGAGATCAAACCTTTTGAATTGCACTAGGagtgtttctgtattttgccTTGGTTTTAATCACTGTcctttgtatgttttgttaaattctGAGGGGGCTTTATTGGGTTTTTAATGGTTTTGGCTACACTTGAGAATCTCTTCCACTACTGcctgctttaattattttatcctGCACCTggtaaattaaaatggttttatgttttgaaaaattAGATGCTTTCTCATGATCATGAATTTCTCAATTTATAGACTGTGTGGCTAATTTGAAGGGTTTTgttgaaaaaaaagagaacccCTCTTGCAAATTAACTTGACTGAGCTTAATTCTTTCCTATTCTATGCATATCCTAAATGCAAACATTCAGGTTAATTGTGTGTTTACTGTTCATGTAAATATTTGGTTTAAATGATAAGGACTTGTGTGGATTATAATGGCCTAGATACCCTTGTTTTGGCTTTATTCTACCAAAGGCTGCTTTACACAACAAATGCTGAGACATGGCAAAAGCATCTTCAAACACagctctggaaaaaaagtgagaccactccaagttcagaaatcaatgttatgttgtctcaattttttccagagctgtatatgtatgtgtatttgcaaATTGGCTATGCACTCCCAGTATGGATAGACTGTGGCTGTAAAAGGTTTTAGGTGTAATGCCCACATGGGGGCGATATTTGCCTTTTTTGCATCTCCAAAGCGTTTATGATCAGATTAACTTGCAGATGTACAGTGTAATCTTGTACTGCAATGAAGGTCTTCTATCTTCGGTATATATTCATGATTATAATCTATTAGTcacatgtacatatttatgaaaaatatcatTATGTTCTCTagaatggattttttttatttttatgattaatcAATTCACACCCATTtggtttctaatgtattttccaCTAAGGACATAGCTGCAGTACCACTTCATGCTAATTATGGTATGTACTAACAGTACAGGGAATACCCTTGTAATGTTTTGGTTCAACCAATGTAATCCGCAACAATCAGTTTCTGtaacaaatatgaaacaaaaagaGGTACGTTACTAAATTTACACTATTGAGAGATCACTCTTAATAGCTTTTAATCACTCTGGTGTGGTCTTTTCATTCCACATCTTTTGCAGTCttctatttgtttgtgtaaaagTTCAGTAtaactgtgaaatgtaaatgaataaaaagatgTTCTAGTTTATACATTGGGATATTCAAGAGTGAGCACAATTGTCCATTTGATCATTGTAAATCCAAAACAACAGTTGAAAGCAAAGACTCTTGTTCATCTCAGAAGCTTGTGGGCCCACAGTCCTTTGATGTGTATAcacgcatttttttttttttttttttttttttttgt

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15084 SLC25A16, GDA, LEU5; solute carrier family 25 (mitochondrial carrier protein), member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176900 lncRNA upstream 53039 11245256 ~ 11247278 (+) True G140632
TU176865 lncRNA upstream 90815 11207506 ~ 11209502 (+) True G140612
TU176631 lncRNA upstream 616705 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 643326 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 667828 10632263 ~ 10632489 (+) True G140435
TU176979 lncRNA downstream 173323 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 180748 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 230165 11537647 ~ 11537954 (+) True G140723
TU177044 lncRNA downstream 324481 11631963 ~ 11633525 (+) True G140738
TU177186 lncRNA downstream 847331 12154813 ~ 12158751 (+) True G140857
AMCG00003096 mRNA upstream 61013 11233448 ~ 11239304 (+) True AMCG00003096
AMCG00003090 mRNA upstream 146216 11146588 ~ 11154101 (+) True AMCG00003090
AMCG00003091 mRNA upstream 160491 11118965 ~ 11139826 (+) True AMCG00003091
AMCG00003092 mRNA upstream 194964 11052987 ~ 11105353 (+) True AMCG00003092
AMCG00003085 mRNA upstream 260989 11019042 ~ 11039328 (+) True AMCG00003085
AMCG00003093 mRNA downstream 2208 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003095 mRNA downstream 23903 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003108 mRNA downstream 195545 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003109 mRNA downstream 238919 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003107 mRNA downstream 264383 11571865 ~ 11600042 (+) True AMCG00003107
TU176867 other upstream 88206 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 543477 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1519865 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1969853 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1995477 9301612 ~ 9304840 (+) True AMCG00002998
TU176980 other downstream 178709 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1066484 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1423249 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1571203 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1798974 13106456 ~ 13110634 (+) True AMCG00003158

Expression Profile