RNA id: AMCG00003095


Basic Information

Item Value
RNA id AMCG00003095
length 2767
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00003095
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11331385 ~ 11356730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGtTACACTGACATCTgctggaggggaaaaaaataacacttgtCAACCTGTAGGTGACTCGGTGTTCCATGAGATATACTGCTACGATCTCTACATCCCTTCTGGTAATGAACCTCGAAgtaaaaaacaggaagaaattGACGATCGGATAGAGAAAGAAATTGTCAAACCACTAGAAGAGAGAGGATACAAGTGTTACCATGGCTGCCGGGACTACACTGGAGGAGGGGTATATATGCAAGCCTTCACTGAACCTCTCAGAGTCATCCCAGTTACAATTCTTCCAGTTTACCAGGACCCGTGGTTCTCCAGAATGAAAAGCTGGTTCATGCAAAGCAACATACTGCGTAGAACGGTTCTCCTGTTATTTGAACCCATTGATCACAAATCACCCTTCTTAAAGACCTGCTTCAGTCTGAATGCAATAGACTCTGAAATGGCAGTATTGCTGCCAAAGCTTTGTGAAACAATAGAGAAAGAGAAGGCCAAGTTCCCCCTGGAGAAACGTCTGCAACTGGCTAAAGGAGAAAGAGATTCAGATTCTTCACTCTGCACAGTTTATGATTTGCCCGACCGTCgGGACGTATATTATAATGGGTCTGTTCTTCCTGtagagacaaaagaaaatatcttCCAAAGGATTAAGCAGGCTGCCTCTAAGAATCAAGATGATGTTTTGTGGGCGGCAGCtactgaaaatgaagatgaaaaaataagaaaggaagCCACCTCTGCTCTGGCCAGAGTCTTGAAGAGAAACCTCATCAAATTTAGCAAACAAAGGGATTTGAAAGATTTGGAACAGGATGTCCAGAAACTTATTCTAAGAGAGACCTCTGCTGACCCAGAGCTGTTGTACAGGCAGCAAGAGTTACACTGCTACATCCTGGCAGCTTTCTTCTTAAACACCTGCATCTCCAAAAACCTAGACATACCAGAAAAGATGGTATCTCCTCGTCGGGCATGGAAGCGGTTCTCATTTgccagaaaaaagaaaaccttcagCTCACTCTGCCAAAGGTTCTACCAGAAATTCCGAGGAGCCCTTTATGCCAACCTAGAGAGTGCCCAACAGAGTACCAGCAGTATTGTGCAGAATTGCATCAGCCTTCTGGAGAAAGTTCCTCGACTGTTTGAAGAGATGGATTCGGTTGCGTGCCGAGATCTGCTGGTCCAAGACTTCCAACGGAACATGAAGAAGCTACCTTGGGCAATCAGGAATATTTTCCTAGTGATCATCACTGAAAAGGCACTTTGTCAAGACAGTGAGAACGATTTTGTGGCGAAACTCTGGAAAGCCAATCCCCGTGGTCCTTTGCCTTTTTACGCACTCGAGGACCATCAGCCCCTGCTCAGACTCCTGCATGACAATGAAAACCATCTCCATTTATCAAACATGTTGGAAATCTTCCTTTCGGTGGCCAAAGCCGTACACTACTGCCATGACCGCAAACTCCTTCTGAGAGACATAACCCCGGCGAGTTTCACTGGATCAATGAGAACTGGGAACCTGGCGCCACAGCTCGTTGTCAAGCTCTCAAGCTTCCTCATGGCACGAAGTGACACGAAGGAAGCCCTGGCTGTCCGTTTCAGTGCGCCGGTGTCTCTGAAAAAACACGAATTCTCCTTTGGCTCAGATACATGGATGGTTGCCATAACATACTTCTCTGTCCTGTCATATGGAAGGCAGCCCTATTTGGAGTTAGACCACATGAACACACAGGATGTCATAAGCGAGGGCTATTTGGATGATGATGgGATTTATGTTCCAGAGAAAACAGATGAACCTCAGAAAACTGACTTGTGTGCTGACATGATCACAAAGGGCTTTAATCTGAAAGAGGTGGTCTCTGTAAGAATGAGCCTTGAGACCAGGAAAGCCCTTCTGAGTTTATCAGGACCCAGTTTCCTGTGCATAGACGATATCTCATACAGTTATTCTACTACTCTGAGTTCAGAGCCTCTGGTGAACTTCCATTTCACCCTCCTTGACATTGCTGCCATGGAGAGCGTGGAGCTGCAGGAGCGGCTGGACTACTTGCAACAGATCGCTCAAGCACTGAGGAACCTCCATGACCTGTCAATCATTCACTGCGACGTGAGGGCCTGTAACATGTTCGTCTTCCAACAACAGATCCAGATTACCAATGATGTCCAACACAAGGGAATATATGTTGTTCGGTTCTGAATCCAGCACATCCGATGAAATTGATTACAACTTCGAGGAAAATATTTATGAGAATATATTGGAGTATGAGGATGTCATAACTTAAGAGAAGAGACTCTCCTTTCTAACAATCATGCAAGAATATAAGAGTTGCAGATTAACCAATGAGGGGCACTTTTACTGTTCCTGGCACCCTGAGCAGCCAGTCTTAATCAaatttgcatgtgtgtggtCTCCAGAGACTGCagtcatattatttttataactgtgtCAAATTAAGACTTTGCACCCTAACACACTGATAATGGGTCAAAGATCTGTATATGCGGCCTATAAAATGAACCTaactaaataaaacttaaaaatactattaaattCTGAAACCTATAAATTGTTACAAAGAGATCaaataacttaatattttaAGCCAGCAGTGTTACTAGACTATACATCAGTATTATTAGTCATAATTTGATTTGCTTGTAAGCTTGTATGGTATTATGACTGTTTCAAAGCATGTTtgaaaccaataaaataataatgttcttgAAGATCAGAGTTCAAAACCAAATTGCCACCAAGACAACcaaccaaa

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176900 lncRNA upstream 84107 11245256 ~ 11247278 (+) True G140632
TU176865 lncRNA upstream 121883 11207506 ~ 11209502 (+) True G140612
TU176631 lncRNA upstream 647773 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 674394 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 698896 10632263 ~ 10632489 (+) True G140435
TU176979 lncRNA downstream 124075 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 131500 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 180917 11537647 ~ 11537954 (+) True G140723
TU177044 lncRNA downstream 275233 11631963 ~ 11633525 (+) True G140738
TU177186 lncRNA downstream 798083 12154813 ~ 12158751 (+) True G140857
AMCG00003093 mRNA upstream 259 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003094 mRNA upstream 23903 11300317 ~ 11307482 (+) True AMCG00003094
AMCG00003096 mRNA upstream 92081 11233448 ~ 11239304 (+) True AMCG00003096
AMCG00003090 mRNA upstream 177284 11146588 ~ 11154101 (+) True AMCG00003090
AMCG00003091 mRNA upstream 191559 11118965 ~ 11139826 (+) True AMCG00003091
AMCG00003108 mRNA downstream 146297 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003109 mRNA downstream 189671 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003107 mRNA downstream 215135 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003111 mRNA downstream 429692 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003112 mRNA downstream 446281 11803011 ~ 11806356 (+) True AMCG00003112
TU176867 other upstream 119274 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 574545 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1550933 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2000921 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 2026545 9301612 ~ 9304840 (+) True AMCG00002998
TU176980 other downstream 129461 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1017236 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1374001 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1521955 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1749726 13106456 ~ 13110634 (+) True AMCG00003158

Expression Profile