RNA id: AMCG00003096



Basic Information


Item Value
RNA id AMCG00003096
length 462
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00003096
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11233448 ~ 11239304 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTTCTCCTTTTCAGTGTATTGACgtATGGACTAGCACTGGCCAATAAACATGTATGTCCACTCAACAACTGtacttGTGGGACAAATGAGCCAGAGAATTCCCTGTTCACTGCAACTCTCAATGCCGGATCCTTTTTGTTTCTGCTGTTGTGTATTTTCCACCACGCTCACATCCTGGACAGAAACAGCAGCTATGCGATTGTCAGTCGAGTGGCCTTGTTCTTCGGCTGTGTGACGGCCTTTGGAGCTTTTGTAGCTGGAAACTGCAATCCTGGATCTGTGCGCTTGCTTCACTACATGGGAGCCGCAGTGAGCTTTGTGTCGCTGTGCTTCTATGCCCTTATCGTGACCTTCCTGACGTGGCGCTGTTACATCAGTGGGCTGGAGCACATCCTCGCTCCCATACGGATGATATCAACCGTCATTCAGTCTTTTTCCACAATCTTATGTATCCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176865 lncRNA upstream 23946 11207506 ~ 11209502 (+) True G140612
TU176631 lncRNA upstream 549836 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 576457 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 600959 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 605566 10624763 ~ 10627882 (+) True G140434
TU176900 lncRNA downstream 5952 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 241501 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 248926 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 298343 11537647 ~ 11537954 (+) True G140723
TU177044 lncRNA downstream 392659 11631963 ~ 11633525 (+) True G140738
AMCG00003090 mRNA upstream 79347 11146588 ~ 11154101 (+) True AMCG00003090
AMCG00003091 mRNA upstream 93622 11118965 ~ 11139826 (+) True AMCG00003091
AMCG00003092 mRNA upstream 128095 11052987 ~ 11105353 (+) True AMCG00003092
AMCG00003085 mRNA upstream 194120 11019042 ~ 11039328 (+) True AMCG00003085
AMCG00003088 mRNA upstream 218323 11003963 ~ 11015125 (+) True AMCG00003088
AMCG00003094 mRNA downstream 61013 11300317 ~ 11307482 (+) True AMCG00003094
AMCG00003093 mRNA downstream 70386 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003095 mRNA downstream 92081 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003108 mRNA downstream 263723 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003109 mRNA downstream 307097 11546401 ~ 11548788 (+) True AMCG00003109
TU176867 other upstream 21337 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 476608 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1452996 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1902984 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1928608 9301612 ~ 9304840 (+) True AMCG00002998
TU176980 other downstream 246887 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1134662 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1491427 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1639381 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1867152 13106456 ~ 13110634 (+) True AMCG00003158

Expression Profile