RNA id: AMCG00003097


Basic Information

Item Value
RNA id AMCG00003097
length 2679
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00003097
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11170540 ~ 11175031 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATGTCCCCCATCACCCAGTCGCAGTTCATTCCTCTCTCCGAGGTGCTGTGCTCAGTCATATCGGACATGAACACCGCTCACATCGTCGTCAATCAAGAGGCCTTGATTAGTCACATGACAAAAGCTCATCCAGGTATGACCATTCCTACCCAAGACATCCTCTACAATGCGCTGGGTGCCTTGATTAAGGAGAGAAAGATTTATCACACTGGAGAGGGATATTTCATTGTCACCCCACAGACATACTTCATCACAAACAGCCTGATGAAAGACGAGCAAAGGTGGATCACGGCTGAAAATgaccctccctcccctcctcccatCACCTATCTGGTGAGCACTGAAAGCTGTGTCGAGACGACCACTGAAGCTGCTCCCACTGTAGCCCACTGCAAATCCTGCCGCTGTTTCACTCAGCAGCCAGCTCAATCTGTGCAGGACCAGCAGTCTGTCAGCGAGTACACTGGAAAAAGTCTGAAGTGGCCCAAAGAAACCAAGCCATCTGTTCAGCACCAGTCTACCTCCACGGCAGCTGACTACCAGCCCAGCGAGATGAGCAAGTCGACCACCAGCCGGAAAGACAAGGAGAAAGCCAGCAGAAAATTTGGCCTCAGCCTATTCAGGCGCAACACGGccaaaaaggaaaaacccaAGAAGGAATACGCCACCTACTCGGGTCAGTTTCCCCCAGAGGAGTGGCCCGTCCGAGACGAGGATGACCTGAACAATCTGCCCCGGGACCTGGAGCACGCCATCATCAAGCGCATCAACCCAGAGCTCACCGTGGATAACCTGGTGCGGCACACAGTCATGATGAAGAAGCTGGAGGAACACGGTATCAACAAGGGCATCTCCACCGAGATACTGGCCTCCAAACACCGGCTCCACTCCAAAGGAAACGGCCGGAGATCTGCTTCCAAAACGGCACGGCAGAAGAAAAAGGGACACTCCTCCAGAGAAAAGCAAAGGGTCCGGAACAAGGCCTCAATGTGCCTCGCTGAGCTCGAGGGAGCGCAGGAGGCTGCCGTGACAGAAAAAGTGCCTTCTCGTCTAAGACCCGAAATAGCCGTTGATGAGTTGGAGGACCAAGCGCGTGAGGATTTTGTCAATGTGGATTCCAAAAATTTATACAAGAAGCGGATAGATAATCCATTTCAAGGGAAGGGGGCGAAAGATGCTGCACTGGGGACAGGCCTGAGAGCTCAGAAGAAGCGTGAAGCAAAGGAGCACAGGGCAGAGCGAAAGGAGCGCGCTGCCCACTGGTCCAAGTCCTGGGATTCCTCCAGGACAAAAGCGACTGGCAGTGAAGCTATACAAGCCATCGATGACCGGCCCTGCAAAAGCATTAAGGGGAAAAGTTTAAATTACGATGCAAGTCTGGACACCAGACCTCAGAAAGAGTGTTTGGATGATTATGGCTCAAGTTACCCAGAAAGCAGCACCTTGAGGATAGAGGACAAATGGAAACATGTGAAGGAAGGGAAATCCAGAAGCGGAAGTGTATATGACGACTGTGAAACAGACACAAGGTACGCGTTTTTGCAGGATGGGTATGTGGGCGACAGTTTGAACACAAAGCATCACTCCAGGCAGGCCGAGGCAGCAGCTGAACAGCTTGGCTGTGCGTTACCGCCCCAGGTCACATACCACTGTGACACCGCTGCGGTGCTGCCTTCATGGTCCAGGCCCAACAACCAGCATCAGCTCTCGCTTTCACTCAGACAGCTCAGCAGTACAGGTGACAGGACCCAGAAGCCAGATCACTTACCATCACACCCACAGATTAACAGTACGAAAAGTGAACTCTTGCCAAAAGATAATGGCCTGCCGCCAGATTTGGGTCAGATGGACAGTGAGGGATTCACAGATGATGACCAGGCTTTCTATCAGCAGGCAGTTGAAGATGACGATGCCTGCAGTTCATTGTACCTGAATGAGGACTCTGATCTGGACAGCAGGGAAGCGTCTCAGTCGGGCACCGTGCATTACCAACAGCCTTTCTCTAGAGAGGACCTGTGGAGCAGCACTGTGGTGGAGGAAGGCTCAGCCAGCGTTCAGCAGGAGCACGGTGCAGTATTTGGGTCTCTCTGTCATCAGGACGATTCAAGGTGGCACGAGTCTGGGACCCAGCAGACGTCCAACACACATATTACCCAAACCGAGAACGGGTGTAGGCAGAGATCTCCGTTCCTGTACGAGCACCGCGAAGAGGCGAATCATACAGTGGAGCCACAAGAAGCGGTGGACTGCAGCATTTTTGACTACTGCCACACTAGTGAGGCTGACTCGGACACTGAGACTTTGCACAAGTCTGCTGATGAAGGGGAAGGCCAGTCCTCCCACTGGAACCATGAGCAGCATGCTGAGGAAAGCCTCCGAAAACAGTTTGAGCAAAAATTAGAGCTTCGCAGTACTCCTCACAATACAGTGTCTAGTCAGAATGCCCCGGGAGGACCGATTCCTGGTGAAAAGGTGGAAAATCACAGCATTACAGGAGACAGTGGAATAGATTCCCCTAGGACTCGTGTGAGTCTCGCTTCCAATAACTCTGTGATCCTGGAAGGACTGAAGCGAAGGAGTTTTCTCCAGAATTTGGAGAAGCTGCACTCCAAGAGCAATGCGATTCGCCCCCAGAGCTCTCTGCTGCAGCTGACGCCGGTGATGAACGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176821 lncRNA downstream 62936 11107396 ~ 11107604 (-) True G140588
TU176798 lncRNA downstream 133229 11011138 ~ 11037311 (-) True G140567
TU176774 lncRNA downstream 202938 10965532 ~ 10967602 (-) True G140546
TU176757 lncRNA downstream 240568 10926118 ~ 10929972 (-) True G140537
TU176739 lncRNA downstream 351381 10818769 ~ 10819159 (-) True G140521
TU176917 lncRNA upstream 58637 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA upstream 130440 11305471 ~ 11308389 (-) True G140648
TU176996 lncRNA upstream 157398 11332429 ~ 11333684 (-) True G140704
TU177049 lncRNA upstream 423027 11598058 ~ 11599956 (-) True G140742
TU177065 lncRNA upstream 443758 11618789 ~ 11619926 (-) False AMCG00003110
AMCG00003106 mRNA downstream 3638 11138197 ~ 11166902 (-) True AMCG00003106
AMCG00003089 mRNA downstream 122778 11040337 ~ 11047762 (-) True AMCG00003089
AMCG00003079 mRNA downstream 214139 10954588 ~ 10956401 (-) True AMCG00003079
AMCG00003081 mRNA downstream 219103 10945019 ~ 10951437 (-) True AMCG00003081
AMCG00003078 mRNA downstream 246962 10919149 ~ 10923578 (-) True AMCG00003078
AMCG00003104 mRNA upstream 32442 11207473 ~ 11224433 (-) True AMCG00003104
AMCG00003099 mRNA upstream 50204 11225235 ~ 11230377 (-) True AMCG00003099
AMCG00003098 mRNA upstream 65740 11240771 ~ 11251621 (-) True AMCG00003098
AMCG00003100 mRNA upstream 78452 11253483 ~ 11272674 (-) True AMCG00003100
AMCG00003102 mRNA upstream 185396 11360427 ~ 11374048 (-) True AMCG00003102
TU176570 other downstream 839168 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1932810 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2322700 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2675944 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3232299 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 465785 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 518975 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1675990 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1675990 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1675990 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile