RNA id: AMCG00003102


Basic Information

Item Value
RNA id AMCG00003102
length 4535
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00003102
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11360427 ~ 11374048 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGTTCTTTACAGGCAGGAAGTCCAACCTCCGTAAATGCCCCTTGCAGCTTCTCACGGACGTCTGTCACACCATCAAACCAGGATATCTGCAGTTCTGATGCGATCGTGGGGGATCAGGGCGTACAGAAACCAGTTCAAACAGCTGTAGTCCTGGTGGGTTCTAATGGCAAGAACTGTGCAGCTCCAGGTGTCACCGTAACAACAGTGTGCCCAGATGCAGCCTTAAAGACCAAAAGGAAGAATCATTTTGGGCACGAGTGGATGTATTTTCTGAAGCCTTCCATGAATGTCAAATCTGACGGCACTCTGAAATTCTCCAGATCCCTCAATGATGTGGGGCAAAAGATGGATAACCTATGTAGTGGACTGAACTTCATTGACAGGACCTGTTCAGAGGGGGAGTTGGCATCTGTCCCAGAGAACTGCTCAGGTATTAATCGCTTCCCGGTCAACAAAACCAAGGCTCATAATGGCAAACCTCACCACTTCAACCTCCCCTTCTCGACTCGTGTCCCCTCCTTTTCCACCAACTACAAATACGTCAACGGCCTGGGCAGTGATTATTATAGCATTCCCATCCCTCAGCAAGAAGGAAAGCTGGTGCCTGATGCACAGAGGAGCACCAACCTCTTTCGccttttcttctcattttccCGTTCGTCCACCGCTGGCAGCCTCCACAAGCTCTCGGAGCTGGAGAGCTACGCCACCCGTTTGCACATGGTCAAGTCCTCCAGCGCGCTCATGGAGGGCAATGAGTCGTACTGCACGGATGACATTGGTGATGATGAGGTTTTTGAAGAAGACAGTGGAGGTCCCAAGTTGCATGGTAAAGTGGAAGATCTGAGAGCCCCTCTTTGCTCGCTGGAGGAGGACAGCGACCTGGATTACTGCTCATCACCCCTCTCTGAGAAAATGGTCCCACAGTCACCGTATTCAATGTCAGGGGATGTCTGCAGGATCTGTCACTGTGAAGGAGACGACGAGAGCCCGCTGATCACCCCCTGCCACTGCACGGGCAGCCTGCGCTTTGTCCACCAGGCCTGTCTGCAGCAGTGGATCAAGAGCTCCGACACACGTTGCTGTGAGCTGTGCAAGTATGAGTTCATCATGgagaccaaattaaaaccattACGGAAATGGGAGAAGCTGCAGATGACGTCCAGCGAGAGACGGAAGATCATGTGCTCAGTCACCTTCCACGTCATCGCCATCACCTGCGTGGTGTGGTCCCTCTATGTGCTCATCGACCGCACCGCCGAGGAAATTAAACAAGGTCAGACCAGTGGGATTTTGGAATGGCCGTTTTGGACAAAACTGGTAGTGGTAGCGATTGGTTTCACTGGAGGACTGGTGTTCATGTACGTACAGTGCAAAGTGTACGTCCAACTGTGGAGGAGACTGAAGGCTTACAATAGAGTAATATATGTGCAGAACCGACCAGAGACCTATAAAAAGATAATTTTCGAGAAGCCTGCACTAATGGAGCCAAACTTTGAGAACAAAGAAGCGCTGGCTCCTCACCAGTCAGACACAAACTCTTCACCTTACACAGAGCCAGAGGACTACAGCGTGGAAATACTCAACGTTTGATTGATGTGGGGGACCTTCCCTTTCACCCCAGTGGGACCACCTACTCCTGCGCTTGGACGGATATTCTGTGATTCGCAGTCTTGTGAAAACGTGACCAGGCTCTTTTTGTCCCTGTAAATCTACGTTGGCTAATCTGTATGAATCAGTACACCAGATCTTGAACACATCTAACTACTGCCATTTAACTGCTGTTATCTGAGCTCTTGAGATTCTCCTGATCAAGGTCTGGTAAAGTCTGTAGCAATGCATacaagcacttttttttttccccaaatccTAACTCTCCTGTTTTATAATTATGGATGAAAAGAGAAATCCTATTGGTTTTTGTAACACAACAGATTGTGGATGAAATAAGGTAAAAAAATGAGTACACGTATAATTccacattttaattatcattcCAGTTTTAAATAAGATTGTACACTTTAAAACTCAGTAAAACATAGTCTGTTGATTCAGACCTTGGGTGGAATTCATTGGTCTATAACcataaaggaaaagaaagtaACTTCAGTAACTTCAAACAAGTCAAGGGGCCCAATTTTTGCTTGACTTGCACAACCATGAGAAGCATACCTTCTGATGTAAGAATGTAAACTTTTTACACTAATTTTTCTACCGATTTAACAGAGCTTTTCTGCTTAGGTTATTTCCACCAGTATCATGCaaactttcaaaatgaaattggtcttattttttattgtctgAATGATACCTCTTGTATTAAATGtgctagttttttttgtttgtattattattagtgtcaGGGGGTATTAACTCCAAATTGCAAGTGCTTAATTGGTGGAAATCAATGGTGCCATCCATGCTGtacggggggggtgggggagtaaTTCAAGGTTCCTTGGTCTTCAAGACATGTATACCTAACCCAACATTCCAAGAGAAGacaaggaaaaaggaaaaatttcaatttaaaaatgttcacatcCTGCACGAAGACAGCTTAATTACTTGTTTCAATCCAGATCAATTTTCTAACTTTCCAGTTGACAGAATAAGGGATCTCCCATTTACTAGAAGGCAGGAGAATGGCACCACCATCTAGCGTGAACATGGACATGATGGGGAGGGGCTTTGATTTGCATTACTTTCTATGATCACCAAAAGGCTCCACATAATCGGATCATGTGCATCTTAAAAGTGCAATTACCCTTTGTTGAGCTGATCATTTGgctaaacattttgtatttcattgtgtattgtgtacagGTGGACTGGAtacataagtatatatatattttttatttctgttgtatttattgGGGAAAGAGTTTGTAAAGCGCACACAGTTTTGGTGTTTATCTAACACTTGTCGGAGTAACCCAGGTTTTATGCAACTAACACTTGCTGTTCGAATCACAGCCCTCAAAGACTCATCACCTGACCCGGCTCCTCTTGTTTACACCGTTACCGTGTTGTTCTGCACCGCACACGCTGAGGTCTATGTCAGAGACTAACTGTCCTGGTATTTGCCCTCATTTCACTGCATGTGTATTACACctgaacttgtttttttttattgttttttaagtgttgtAGCATTTCCCCCTCAAATGATATTATTACATTGTGGCCATATTGCCCACTTCTGTATTGCTGTCATCCGGCTCTGAGAGGCTGGCCCTTTTAGAGAGTTTTGCGGAGTAACAGATGAGGCAACTTCACCCCATAGCTGAGCCACTTGTCACACACGGCCCAAAGACCTGTACAGCAGAGTGATGTCCCTATGCCTCTACTCTgatgttttttagattttatagttttattgaaatgagaTGCTTTCCAGTGCAGTGTGAACAGAGATGAGGACTTGTCAAGTAGAGAGATCTGAAGAGGAACATGAAGTTGTGCATTTTGCCATGTGACATTTTTATAGCCAATCAACATtccaacattttttaaatccataaatCAAACCAAATTAGCATAAGGAGCCAAATAGTCTTTTAGAGCCATGCTAGCAGTCATTTACTACCAGGCTTTAGATTTTCTTTGGAAAAAGCGTTATTTGCATAAAATGATATAGTGTTTCATTAATGACCACTTGCAGCAAATTAAGTTGAACCTCAAAAATACCACTCTGTTTAATCTCAGATTCCTTTTCTACACATCtgaatgtaaattatgtttgaaGTGTAATCATCAATTTGGGTAGCAGGACgtgggttatatatatatatatatatatatatatatatatatatatatatgtacacacgtATGTATGTTTTGGTGGTAAATTCAGAATTATTTGTCCCctatgaaaaatgaaagaaaattcaTAAAGTGGTTCTCTAGTAGATATTTATCATTCGAAAATGTATCCCTCCTTTCAGTCAATTTAAATTTGCTCATTGAAATGACACTGAGATTATTTTATGTGAAGTGTGGCACTACACAATTAGGGCTTTCTGCagctcaattattattattaagttggaGGTATTATAAGTAGTATTATAAGTTGGAGGGCCTGCTCCTTACACTGAGCTGAGGTGAAACCTAACAGCACAAGAACGAAGTTAACAGCTGACCTCACAGCAACTTTAATTTAGCATAGattgtgtgctgtttcttttttcttttcaaaggtTTGTGCtgccaagaagaaaaaaaggaagggaAGGGGGGGGTACCAACAAAGACATAACACTTCGGTCTTTCTTGCTTTCTAAATAGCTAAATATGATTGttgataaatgaaaacaaacaaatgttgtaatttaaatgtatagttttgtattcttttatgtatgtttatatatattttctcagtattctctctcttttagCAGGTTGGCTCTTTAGTTTCCTATTGAAATGTAAGTGATTACGTTTGTGCCGTGGTTTCAAGGGGTTATTGATTgcagcaataaaaaataaaaaatctttattaaaaaaaataaaaaaat

Function

GO: NA

KEGG:

id description
K10656 MARCH1_8; E3 ubiquitin-protein ligase MARCH1/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176996 lncRNA downstream 26743 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 52038 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA downstream 52038 11305471 ~ 11308389 (-) True G140648
TU176821 lncRNA downstream 252823 11107396 ~ 11107604 (-) True G140588
TU176798 lncRNA downstream 323116 11011138 ~ 11037311 (-) True G140567
TU177049 lncRNA upstream 224010 11598058 ~ 11599956 (-) True G140742
TU177065 lncRNA upstream 244741 11618789 ~ 11619926 (-) False AMCG00003110
TU177066 lncRNA upstream 251377 11625425 ~ 11626381 (-) True G140756
TU177075 lncRNA upstream 412366 11786414 ~ 11789926 (-) True G140764
TU177074 lncRNA upstream 421928 11795976 ~ 11797014 (-) True G140763
AMCG00003100 mRNA downstream 87753 11253483 ~ 11272674 (-) True AMCG00003100
AMCG00003098 mRNA downstream 108806 11240771 ~ 11251621 (-) True AMCG00003098
AMCG00003099 mRNA downstream 130050 11225235 ~ 11230377 (-) True AMCG00003099
AMCG00003104 mRNA downstream 135994 11207473 ~ 11224433 (-) True AMCG00003104
AMCG00003097 mRNA downstream 185396 11170540 ~ 11175031 (-) True AMCG00003097
AMCG00003101 mRNA upstream 65317 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003103 mRNA upstream 82192 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003105 mRNA upstream 177643 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003110 mRNA upstream 234415 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003114 mRNA upstream 425607 11799655 ~ 11802872 (-) True AMCG00003114
TU176570 other downstream 1029055 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2122697 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2512587 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2865831 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3422186 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 266768 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 319958 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1476973 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1476973 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1476973 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile