RNA id: AMCG00003103



Basic Information


Item Value
RNA id AMCG00003103
length 5542
RNA type mRNA
GC content 0.45
exon number 31
gene id AMCG00003103
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11456240 ~ 11478384 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCAGGACGAACATGGTCGTGCTGTCAGAGAGACGCTGAGGCGAGAAAATAAACCATCCAGTGTGTAACcgttgaaaaaacaaacatacattaataaccAAAAAAGCTCCAACAAACAAGATGAATGGACTGACAGTAGTCAATGGTCCATCAGAACACAATGGCACGGAGGGAGAACATGTCTGGGAGCGACCCTGGTCTTTGGAAGAGATGCGAAAAACCAGTGCAAACTGGTCTTTGGCAGCTGATTCTGGGCTGCTTCTGTTCCTCCAAGACTTTTCTCAGCGCATGCTCTCCAAAACCCATGAGATCGAGAAGCAGCTGGACGGCCTGATCCGTGACACAAAGGCGACCGACTCCTGCCTGCACACTGTCTTTAACGACTTCCTCATGCTCTCAAATACACAGTTCATTGAAAATCGAGTCTATGATGAGGAAGTGGAGGAGCCAGTCTCTAAGCCAGAGGCCGGAGAGAGACAGCCGGAGCAGgAGAGAACGCGGGAACAGAAGGAAGCAGAACTTATCCCAAAAGTTCAAGAAGCAGTAAATTATGGATTAAGAGTTTTAGAGTCAGCTTTTGAACAATTGGACATCAAAGCAGGAAACTCAGACTCAGAAGATGAGGAAGTCATTGACAGAGTAGAGCCTATACTGGAACCCAAGGATCTGTATGTTGATAGACCATTGCCTTACTTGATAGGCTCTCAACTATTCATGGAGCAAGATGATGTGGGGCTTGGGGACCTTTCAAGTGACGagaTGTCAATTGATAGTGATCGGGACAGTGTAGTGGACAGTGAAGAGGACAAAGATGAAGAGCCATCAGATGATGACTTTGATCAAGATGATGAAGTACAGGACATTGCAAAGAAAaagtcATCATTGATCAGCGACGAGGAGGATGACGATGAAGAGGACGACTCCGACATCTTTGGCGATTCAGAcaaggaggaggatgaagacaAAAAGAACTCCACTGGGCCATCTTCCTTTGCTGATGAACTGGCGGCTCGTATTAAAGGTGATGTGCCTAGCAAAGAAGACGAGGAGCAGACATcATTATCATCTGCTCCATCTGCAGCAAAGAAGAAGggtaaaggaaagaaagaatcaAAACCTGATAGAGCCCAGGGTGAGGAGGATAACGATGAACTGTTCAAACCTCCGAAGATGGAAGATGAGGATTTCTCTCCTTTTGGGGGGAAAGGAGGTCTGTTCAGTGGAGGCAAGGGACTGTTTGATGACGATGATGAGggGGATCTGTTTGCTGATGCACCAGAAGACAAGATCAGCAAACCACCTGTCAGTAAAGAGCCAGCTCCAGCCATCAAGAAGATACCCACTGGTGCTGTCTCCATTTTCCCAGaaaatAGCCTATTTAGCTCTACGAAAAGAGAAGAATCCACAGAAGGCAGAGAGAATGGGAATCTGGTGGAAAACAAATGCCCGTCGGCCCCAAAACAGGCCGCCTTGGGAGGACTCTTCGATGACGACGATGAGGATGACTTCTTTAGTGGAAGCAGTCTCAAAAAGTCAAATTCTGGATTGGAAAAGCCAAAGCAGAAGAAAGCCGTGGATCTGTTTGGTGGAGATGAAGAAGATGATGCAGATATTTTCAATGAGATCAGCTCTGCAGCTCCCCAACCCAAAAATAAGGAAGAAGAAGCAGTGACCGTGACCGTGCCTGAGAAGAAGATGCCTGCTGGTGCCATCTCCATGTTTGGACCCGGGACTAAGAACCTTCTTGCTGAAAGTCTGAGGAAACGGCAGCCGTCCACAAGCGAAGAATCTGAGAAATCTGAGAAATCTGAGGAGAATGTCTCTTCTCAAGACATTTTCAGCACATCCACTAAGCCTTCTGAAAAGTCCAAACCCAAAAGCCTTTTTTCAGATGAGGAAGATTCACAGGAGATATTTCAATCCATTCAGAACAGTAGTAAAAATCTGTCAAATCCTGCACCTGTAACCCAGAGCAAGATCAAGACACCTCTGTCCATTTttgatgatgaagaagaagagGATCTGTTTGCTTCCACCCCTCCAAAACCAACAGCCAAGAAGAGCTCATCACAGAAAGCAAGTAAACCCCTCTCAAGCTCGCTCTTTAGTGATGACGAGGATCAGTGGGTAACCTCCAAACCCCAACCAACCACAGTTAAGACTGAAGAAAAATCCGGAAGCACAAAGACCATTGAAACGATGCCTCCTAATCTCTCGGCGGGCGTGGCCCAGAATAAGGCCAGCTTGTTTGATGAAGACGATGATCTTTTTGCTGCTACAAAGGAATCTAGTCAGAAGAAGCCTCAGAGAATCTCTCTTCTGTTTGAGGAAGAAAACGAGAACGACGACGACAAGGGAACCCTATTCCAAATCGGAACAGCTGCCACTCCCAGTTCCCTGGATGTTAAAGTAAAATCGCAAGCAAGCCCTCTGGCTCCTTCTCTGTTTGACAAAGAAAGGACAGAAGACTTGTTTGAAGCGCCAGCAGAAGCAAAACTGCCTGTGGAAAGTGCAGACCCGAAGAAGAAGCCTGCTGGGGCTGTCAGCCTTTTTGGGGGATTTGATGTATTTGGACAACGGAAACCAGATGCAGCAAAGATCAAGAGTCCTTTGGAAGACCCCGAGGATGATGAGTTCCTCTACAAAGATGCCCCTCCCCCCCTGGAAGAGGAACCCAAGAGCAAGAAGAAAAACGTACTGAGCCTGTTCGATGacgatgatgaagatgaagaggaACAAAGCCCCATCTTAATATCCAGCAAGCCAGCAGTAAAAAACCCACAGAAGccaaCTGAGCAGAGACCTCGAACAAAGAGCACAGGAGTTTTCCAAGACGAGGAGCTGCTGTTCAGCCAAACACAGCAAAAGGACAATGACCCAGATGTTGATCTCTTCTCCAGCACAGGAAAACCTGCGAGCCCGAATCCTGCCCCCATGAATCCAGCAGCACCGGTGCTGTttggtgatgatgatgaagatgatctCTTCAGTTCTGGGAAGCCCAAACCACCactgAAGCCACCTGAGAAGAAAACCACCAAACCATATAAAGATGAGAACCTCTCAGCTCTGCCAAGCGAGGGGTTTACTAAGGCTGCTTCCACATCACCCCCCAAACCGATGATCCCCCCGAAAGCAGCAGATAATAAGGCTAATTTGGCCATTAATCCGGCTAGCCTCCTCCCTGGTGCCTCACGGCGAATTCCAGGAGCAGAAAGTGTGATCCCTGGCCCGGCGCCCTCACAGCCTCCCGCTCAAGAGGACCTGCCAGGCTCGGCTCACACCTCACACTCTCGGAGAGCAGGGGAGGTGGCGGTCAGCTTTGACACTCCAGTTCAGGCCAAGACTCTGCAGAGTGCCAATAAGGGTCGGACCAAAGGAGCTGGCAACCGCAGGCCGCAGACGAGAGCAGCCCGGCAGTTGGCAGCACAGGTGTCAGACGAGATCAAGGATGAGGACTACAGAGTTGAAAGTGCCATAGGGGCTGGGTCCACCTCTGctgttcacacacagacacctccaGCCCCAGACCTTAAATCCAACACCCACGCTATACCACCATTCCCAGAGGTGGCAGTACCCAGACTGCATGCAATAGAGAAGACGTCAGCCAAAAAGGAGGTGCCTGAGCCCAAATTACCTGTAGCAGATGAGGATCTTTTTGGATCAGATGATCTATTTTCTCCGTCAGTGGCTACAAAGGAATTGCCATCTCCAAAACCAAAATTGAAGACTTCTGAGGGCATGACAAAACCACAAGGCCAGCTGCAAAGCAAGGAGGTGCTGCCCTCCATATTTGATGACCAAGGAGATGATCTGTTCAACTCTGCCAAGCAGAAGCCCTCAAAGAAAATCAAGTCCATTCCAttcctggaggaggaggaggatgatgaCATTTTTGGCATGGGAAAGAGCAGCAGCATAACCAGTAAGAAAGAAACGAAGCCTTCCACACAGAAGGAGCCTAAAGTGCCCAAACAGGACATTTTTCAGGACGATATTTTTGAGGCAGAATCGGATAAAGCTGCAAAAAAGCCTAAAGAAAAAGTCCTGGATGCCAACTTGTTTGATGATAATGTTGACATATTTGCTGATTTAACagtaacaaaaccaaaagaaaagaagTCAAAGAAGAAAGTGGaaactaaatcaatatttgatgATGATATGGATGACATATTTTCGTCTGGCACAACAAAAGCAGTAGCGAAGCCCCAGTCCAAATCAAAAAAGAGTCCGTCGGCTCAGGAGAGCAGCACGAAAGAGGAAACAGACCACAGCATCTTCGATGACCCCTTGAACGCATTGGGTGGCAATTGAATTACTTTAGGTTTCAGACTTTTAATACTGTGcaaacagatttgtattatttgagtGATACACAAGGGGTAGTATGCATTAACACTGTTAATAGATTGTTGTTGAAGTCATTCATAACCtgtacaaataaaagtaaaatatgtcaAAATTAATTCCCTGTCACATGCCCAAAatcagattttatatatatatatatatatatgtagtatcTTTTTTTGCAGGAGGCGGAGGTTCAGTGAGACTAACTCTAAATATTAACTGctccatttctttcattttttgattGATGTAGCACTTACACCACCTGCACTAATTTatccaaacaaaatgtttcttttttatacaaaaaataaacaaatacatcaaacatTGTAAGATTATCTTTTATATATGTTCAGTTCATCATATACTGTAATATTTGAAATTAAGAATATTTGGTAACAGCATTACAATTCTgttaaaattgacattttcagTATTGGGACATATTTACTGAAGTCTGTAAACTGCCTGATATGTTCAGCTTttgatatatgtatgttttcattgtaattctGATTTCTGAGAACTAAAGAATGGCATTTTGTGTCACTGTATTTTACTCCCTTACTACTCCCCTTTACTACAatctatttataattattttaaaagcatgggAAAACTGGGGTCCCCAAAGCTGGACTAGTTTTCTAATGCAGCTGTTCACCTACGATCTTAAACAGTGTTCTGTGGACCAGTGGTACTCCAGAAGCTCCACTACTGTGCTCTAGGTTTTGGGATTCGGCTAGGTTGAAAAACACAGGTTCTTAAGTAAAATCCTTTTTTAAGAATAGAAGTTTAGGTTTAGGAATCAGATTGATACATTGAATGTGTCTAGGGTTAAGATTAGGTTCCAGAGCAAAAGGTGGATAGGGTTGTGGTTGAGTTTCTACTGAATTAGATCACTATTTGAGCTTTCGCCCTGGGTATTGTTAGTGCTAATAAGGGCAGTTCTACCGTACAATGGTGTATTGTCACAAGGCATTCTGTTTGGCACTACACTGCAGTGTTACAGAATAAAGATTTGGAGCATTATTGGCTTGTTAGGCTTATTaattgttctttcattttctgtggatTTGGATGagtaaaaatgaaatcagaatgtGGAATGTAATATCTTTCTCCCCAATGAATCTATGGGAAattgtgaaaagaaacaattattCTTTAAACATCACTT

Function


GO: NA

KEGG:

id description
K18462 FAM21; WASH complex subunit FAM21

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU176996 lncRNA downstream 122556 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 147851 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA downstream 147851 11305471 ~ 11308389 (-) True G140648
TU176821 lncRNA downstream 348636 11107396 ~ 11107604 (-) True G140588
TU176798 lncRNA downstream 418929 11011138 ~ 11037311 (-) True G140567
TU177049 lncRNA upstream 119674 11598058 ~ 11599956 (-) True G140742
TU177065 lncRNA upstream 140405 11618789 ~ 11619926 (-) False AMCG00003110
TU177066 lncRNA upstream 147041 11625425 ~ 11626381 (-) True G140756
TU177075 lncRNA upstream 308030 11786414 ~ 11789926 (-) True G140764
TU177074 lncRNA upstream 317592 11795976 ~ 11797014 (-) True G140763
AMCG00003101 mRNA downstream 587 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003102 mRNA downstream 82192 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003100 mRNA downstream 183566 11253483 ~ 11272674 (-) True AMCG00003100
AMCG00003098 mRNA downstream 204619 11240771 ~ 11251621 (-) True AMCG00003098
AMCG00003099 mRNA downstream 225863 11225235 ~ 11230377 (-) True AMCG00003099
AMCG00003105 mRNA upstream 73307 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003110 mRNA upstream 130079 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003114 mRNA upstream 321271 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003113 mRNA upstream 329526 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003118 mRNA upstream 454082 11932466 ~ 11935399 (-) True AMCG00003118
TU176570 other downstream 1124868 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2218510 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2608400 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2961644 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3517999 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 162432 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 215622 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1372637 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1372637 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1372637 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile


AMCG00003103 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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AMCG00003103 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00003103 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.