RNA id: AMCG00003105


Basic Information

Item Value
RNA id AMCG00003105
length 2604
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00003105
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11551691 ~ 11562305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAGCACCGAGGACGCCATGAGGAGCGATTCTCCTCAATGCCCCAAACCCAACGAGCCAGAAGAGCCCCAGGGCACCGCTGTGGAGCAGGCTGGCCCGGGCAGAGAAAGCCCCACCGAGAATATGGCAGGTGCTTTGGGAGCAGAAAGCATCATTACACAGGAAATGCTGGATGAGGAGAAAAAGCTGATGGCAGaaggggagaaggaggagaaagagatgTTGGAAAAGGCACGTGCGTCCTGGGAGCGGGAGTCCAATGAGATGCGCTACAAGAGACTGCAGCACCTGCTGGAGAAGAGCAATGTCTACTCCAAGTTCCTGCTCACAAAGatggagcagcagcagctagAGgaaaaaaagagaaaagagaagctgGAAAAGAAGAGGGCAGCTCTTTTGTCCAAAGAAAAGATCTTGAATTACTGGATGTCTCCTTTAGTTGAACGAAGGAAACGGGGAAGAGAGGAAGAATATAAAATTGCGGACATCATGTCGAAAGAGGATATTTTGTCAAAGGCGAAAAGACCTAAAGTTGAGGTGAAGGACGAACCGATGTCTCCATCCAAGAAGTGGGAGGCAGAAGACATAGAGAAGATGAGTGATTCGAACTCGGACATTAAGAGCCGCCTCTCGCAGACGGAGAGGGAGAATGTGCAGCACATGTTTGATCCATTGAGAACGGTCAACGGGAAACCGGTGCCCTACCAGCAGCCCAAGTACTTCACTGGGGGCATCATGAGGTGGTACCAAGTGGAGGGCATGGAGTGGCTTAGCATGCTGTGGGAAAATGGGATTAATGGCATCCTGGCTGATGAGATGGGCCTGGGGAAGACAATCCAGTGCATAGCAACCATCTCCATGATGGTGGAGAGAGGGGTCCCCGGACCTTACCTGGTGGTGGGGCCCCTGTCCACACTACCCAACTGGGTCGCCGAGTTCAAGCGCTTCACACCTGAAATCAGTGTATTGCTATATCACGGACCCCAGAAAGAAAGGCATGAACTTGTCAAGAAGATTCGCAAGCGCCATGGTTCAATTCAGATGCACCCTGTTGTCATCACATCCTTTGACATTGCTATGAGAGACCGAAAATTCCTGCAGAATTGCCACTGGAAGTATCTGATAGTTGATGAAGGGCACAGGATCAAGAACATGAAGTGCCGCCTGGTTCAGGAGCTGAAGCTCTTCCACTCTGAGAATAAGCTGCTCCTCACAGGGACCCCACTTCAGAACAACCTGTCCGAGCTCTGGTCTCTGCTCAACTTCCTGCTGCCTGATGTCTTTGACGACCTGAAAAGctTTGAGTCCTGGTTTGATTTAAGCAGCATTAGTTCTGATGCAGAAAACATTGTACATAAAGAACGGGAGCAGAATATATTGCACATGCTTCATCAGATCCTCACACCATTTTTGCTCAGGCGGTTAAAGACTGATGTCACTCTAGAAGTCCCTCCGAAGCGAGAGGTCATTGTCTATGCTCCTCTCACCTCCAAACAAGAGTTTTTATACACTGCCATCGTCAACAAAACCATACGGCAGGTGCTGGGGCAAAAAGAGGTCAACACTGCTCCAGTACAGCTGACACCCTCTGGCAGGCCAAAGCGCAGGAGCAGGCGTGCAGTGAACTACAGCGAGTTGGTTGACCGCTCTGATGATCTGGAGAAACTTGCCCAACAACTGAAGAAAGAGGAGGCTGAGCAACTGCAGATACCAGTGAGCGATGTGCAAATGCCAGCGGATGTTGAGATCCATGTGCAGATGAATAGTGCCCTGATGATCTTGAGGAGATGCTGTAACCACCCGTACCTAATAGAGTATCCCCTGGACCCTGTCACTCAGGGCTTTAAGATTGATGAACAGCTGGTAGAATCATCTGGGAAATTTTTAGTATTGGATCGAATGCTCCCAGAACTGAAGAAAAGAGGCCACAAGGTGCTGATTTTTAGTCAGATGACCTCCATTTTGGATATCATTATGGACTACTGTTACCTAAGAGATTACAAATACAGCCGCCTGGATGGATCAATGTCCTACACAGAGCGAGAAGACAATATGAACAAATTCATCTCTAACCCCGAGGTCTTCCTCTTCCTGCTGAGCACTCGTGCGGGGGGGCTGGGAATTAACCTGACCTCTGCTGACACAGTCATCATCTTTGACAGTGACTGGAATCCTCAGGCTGACCTCCAGGCCCAGGACAGATGTCATCGTATTGGACAGACCAAGCCAGTAGTTGTGTATCGTTTAGTTACTGCCAACACGATTGACCAGAAGATCGTAGAGAGAGCTTCTGCCAAGAGGAAACTGGAGAAGATGGTCATCCATAAAAATAAATTCAAAGGAGGGAAGGCAGGACTAAACCAATCTAAAAGCTGCCTGGATCCACAAGAGCTTATGGATCTGCTAAAATCCAGAGATTTTGAGAGAGAAGTAAAAGGCACTGGTCGAAAAGTCATCAGTGACAGAGACTTGAAAGCCCTGTTGGATCGCAGTGACCTGCTAGCCCTGATGAAAAGCAATATGAAGCAGGAAGAAGAAGGAGTTTTCAAAGTGATTGAAAATGATGAACAAGATTCTGCTGAAATTCGCCTGACGTGA

Function

GO:

id name namespace
GO:0045132 meiotic chromosome segregation biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K19001 HELLS, DDM1; ATP-dependent DNA helicase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176996 lncRNA downstream 218007 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 243302 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA downstream 243302 11305471 ~ 11308389 (-) True G140648
TU176821 lncRNA downstream 444087 11107396 ~ 11107604 (-) True G140588
TU176798 lncRNA downstream 514380 11011138 ~ 11037311 (-) True G140567
TU177049 lncRNA upstream 35753 11598058 ~ 11599956 (-) True G140742
TU177065 lncRNA upstream 56484 11618789 ~ 11619926 (-) False AMCG00003110
TU177066 lncRNA upstream 63120 11625425 ~ 11626381 (-) True G140756
TU177075 lncRNA upstream 224109 11786414 ~ 11789926 (-) True G140764
TU177074 lncRNA upstream 233671 11795976 ~ 11797014 (-) True G140763
AMCG00003103 mRNA downstream 73307 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003101 mRNA downstream 96038 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003102 mRNA downstream 177643 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003100 mRNA downstream 279017 11253483 ~ 11272674 (-) True AMCG00003100
AMCG00003098 mRNA downstream 300070 11240771 ~ 11251621 (-) True AMCG00003098
AMCG00003110 mRNA upstream 46158 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003114 mRNA upstream 237350 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003113 mRNA upstream 245605 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003118 mRNA upstream 370161 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003117 mRNA upstream 375412 11937717 ~ 11962072 (-) True AMCG00003117
TU176570 other downstream 1220319 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2313961 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2703851 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 3057095 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3613450 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 78511 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 131701 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1288716 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1288716 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1288716 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile