RNA id: AMCG00003109


Basic Information

Item Value
RNA id AMCG00003109
length 1863
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00003109
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11546401 ~ 11548788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGTTAGgaaaaacaagtgcaaaatGGAAGATGGAGAATTGAGGAGGATCTTGGAACTCGAAGCTCAAGTTGACCGCCTCCAGAATGCCACGCTGTCACTTGAGGAGGCTAATCTAAAACTCCACAAAACATATGAGCTACAGGAAAAACCAGAAATACATATGCAGACTCACGCCACAACCCAAGCTGTCTTTTGGGCTTCACCACGACAAAATGACCATCTAAACTTCAAACAAGACAATGGAAATGAGCAGGAGTACTTTAATCCCAGGATGCTACAAAGCAAAGAAGAAACCATGTCTGAAATTGGCAATTttctggaaaatgaaaacaaagttcTTAGAAATATACTAAAGGACAAAGAGAAGCTGATCAGCCACATAGAAAGGAGCACGTTAGAAAAGACTCTGTCTGAGGACAAGCTGCACAGGGATGCAATAAAGATCTTTGAGAAACGACTACAGATGAAGGATGTGGAGATCCAACAGAACCTGCAGTTATTAACAGAGAAAGAGCAAGAGCTTGATGAAGTAAGAAGCCAGACTGAAATGAAGGACACAGAAATTAGGTCACTGGAAAAAATGCTaaagcaagagaaaaaacaaaaccaggagaCTATTGCAAACTTGGAAAAAGCTTGCAACTCTCTTAAGTATTCACTTTTAAAAGCCAAAATTGACCAGGAAACAGTTGTCAAGAAGCTAAAACACCTCCTTGAAAAATATGCTATGGTCAAAAAGCATGCCAGATCAGCTAATGCACAGTCACTTCAGAACATTGCTGAGAAGGAGCACATTATGAAACTTCTGGATGCTGCTAAACAAGAAAAGGAGAAAGTGTGCACAGAGCAGGGCCTTTTGAAGGAAGAGAAGGAGTCGGCCCTTATTGCCTTGACAGATGTGAAACAAGAGATGAGTCGCATGAAACAGGACTGTTACAGGAATCTAGAGGACAAGGAGAGATTACAGAAGGTGGTTTCCAGAATGAAAGATGAAAACATAACGCTGCAGAAGgagcttcaagatgctcaacagGAAATTCAGAGAGTAATGGATTTAATGTCCATTCAGAAGGTGGAGAAGGAATCCTACATGAAAGAACTGGAAGAATCCAAGAAAACCATTGagaaattgcaaattaaaatggatgAATATATATCAGAGAAAGAATGTACAAGTCTTCAAATGTTAGCAATGAAGAGAGATGCAGATATtatccaaaacaaaatacaacaagaaATACAGCAACTTCAACAAGAGAAGAATGCTACTGAACAAGCAGCTAAAGATTTGAGGAGGGAGTCTGAAGCATTGACCAAATTGGTAGCAGACCTGAAAGAGGATAAGTGTATGCTCAGAAGAGAACTTGATGAAGTGGGGCAGGAGAAGGCTAGTTTAGAAGCTAAAAGCCAGAATCTTCACCAGGTAGGAGATAAATTGAAAGATGTGTTCTCTGTGCTGCAGAAGGAGCGTAATGCTCTACTGGCTGAACTTTGTGACTTACGGAAAGATTACCTAAACCTGAGTGACCGTATTACAGAGAGAATGAATGAGATATGTCAAGAAGATAGCCACATGAGTATTCAGGAGCTGAAATTAAGTGGTGAGGACCTCATCAAGCAGAGAAATACTCAACAAAGAGAAGAAAGTGAGGAAGTTATAAATCAGATAAAGAAGCGACTTgaagaggagaagaaaacagtCAGTCGGGTGACCGTTTCAGGACCCATCAGCAGCTATGGGGCTTGTGAACAGAAGGAAGTGCTCAGACGGTCTACACAATTTCATGACACCAGCTCACGGGGGCCTCTCAGTTATGGCACTGAAAACGGTTCAAATGTCTCCTTCTCCAGAATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177027 lncRNA upstream 8447 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 55739 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 65364 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 299123 11245256 ~ 11247278 (+) True G140632
TU176865 lncRNA upstream 336899 11207506 ~ 11209502 (+) True G140612
TU177044 lncRNA downstream 83175 11631963 ~ 11633525 (+) True G140738
TU177186 lncRNA downstream 606025 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 737259 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 823211 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 835888 12384676 ~ 12385070 (+) False AMCG00003129
AMCG00003108 mRNA upstream 42397 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003095 mRNA upstream 189671 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003093 mRNA upstream 215275 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003094 mRNA upstream 238919 11300317 ~ 11307482 (+) True AMCG00003094
AMCG00003096 mRNA upstream 307097 11233448 ~ 11239304 (+) True AMCG00003096
AMCG00003107 mRNA downstream 23077 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003111 mRNA downstream 237634 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003112 mRNA downstream 254223 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003115 mRNA downstream 349172 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003116 mRNA downstream 375539 11924327 ~ 11930101 (+) True AMCG00003116
TU176980 other upstream 58517 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 334290 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 789561 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1765949 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2215937 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 825178 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1181943 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1329897 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1557668 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2631992 14180780 ~ 14184643 (+) True G141331

Expression Profile