RNA id: AMCG00003110


Basic Information

Item Value
RNA id AMCG00003110
length 2349
RNA type mRNA
GC content 0.50
exon number 18
gene id AMCG00003110
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11608463 ~ 11622649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCGAATCACCAGCAGGCCATGGGCAACGGTTCAATCAGAGCCCCTCGGCTGGAGGAGAGCTGCCTGGCCTCCGGGTTCAAAGAACCACCAGCGTGGGAGGTGATTGAGGCCCTGAAGGCCAAGATAGTACgactggaggaggagctgggcatGCGTGACAAGGAGCTGGAGGCCAGAGCGAAGCGGCTCGGTGCCCTAGAGAAGGAGCTACAGGCAAAAGTGTCCCAGATAGACAAGCTACAAGATGCCATTGGCTACAATAGTGCTGCACAGTCCACGGCCCAGGTCAGCCCAGGTGAGCGCCTCCTGAGTGTCATCAATGAGGGGCCCACACGCTTCCACAGGGTGGCCGTGGAAGTTCACCGCCGCCTCAGGGCCAAGGAGGGAGTGTCAGCTGAACCAACCTCCCGACACTACTACAACCACACTGTCCAGAAGCCCTCTTTTGGCAGGGACCGGGTCCATAAGGATTCAAGCACCAAAAAGCTGATAAATGAAGCTATCATGAACAATGACTTCTTGAAGAAGCTGGAGCCACAGCAGATGAGAGAAATGGTGGAGTGTATGTATGAGAAGACCTACAATGAGTGCCAGGTGGTCATCCAAGAAGGGGAGCCTGGAAATTACCTTTATGTGCTAGCAGATGGCTTGCTGGAGGTTATACAGAATTGCAGGCTTCTTGGACAAATGCACCCTGGAACAGCATTTGGTGAGCTGGCCATACTGTACAACTGCAAGAGGACAGCCACAGTCAAAGCGGTCTCCCAGTCACAGATCTGGGTCCTCGACCGGCAGATGTTTCAGAATATCATGATGAGGACGGCACAGGCGAGACACGAGGAGTACTTCAGCTTTCTATGCAGTGTATCTTTATTGAAAGACTTGCCTGAAGAAAAGCTTGCAAAAATTGTGGACTGTCTGGAAGTGGATTATTTTGATAAAGGAGATTACATCATTcgtgaaggagaagaaggaaacACGTTCTTCATCATAGCGAAAGGAGAGGTGAGTGTCACACAGACCATGGAGGGATCATTGGAGCCCCAGGAGATAAAAACTCTAGGGGTGGGAGACTATTTTGGAGAAAAAGCCCTGATAAGTGAAGATGTTCGCTCAGCAAACATCATCGCCAAGGAGAATGATACCCAGTGCCTGGTGGTGGACAGAGACACATTTAACCAGATGGTGGGGACTTATGAAGAGCTACAAGCATACCTGAAACAGTATGTGAAGCAGCTCTCAATCAGTGACGAGAAGAGGAATGCTATCCCCCAGTCTCCTCTCATTGATACCACTCCTGAAGGCAGTGAGCTTACCAGGGTTAAGGAGAAGATGGCTCGTATCTCCACCAACTCACCCTTCAAGCACCTGCAGATTGTCACCACGCTGGGCATGGGCGGCTTCGGCCGAGTCGAGCTGGTGAAGATGAAAGATGAAGATATAACGTTTGCCCTGAAGTGcatcaagaagaagcacattgtGGACACTCGACAACAGGAGCACATCTACTCTGAGAAGAACATCCTGCAACAGACTAACTCACCGTTCATTGTCAGGTTGTTCAGAACTTTTCGGGACAACAAGTATGTGTACATGCTGTTGGAAGTGTGTCTGGGAGGGGAGCTGTGGAGTATTTTGCGGGACATAGTATCTGATGGAAAGTTGCATTGTAGGAGTTTCTTTGAAGAGCCCACTGCACGGTTCTGCACTGGCTGTGTCCTGGAAGCCTTTGACTATCTGCATGGCCGGGGAATAGTCTATCGGGACTTAAAACCAGAGAACCTGCTGCTTGATGAACAAGGATATGTGAAAATGGCTGATTTTGGATTCGCAAAGAGGATTGGCTTGGGAAAGAAGACATGGACTTTCTGTGGCACCCCGGAGTATGTAGCTCCAGAGGTCATTATGAATAAGGGACATGACTTTGGAGCTGACTGCTGGTCTCTGGGCATCCTCATCTTTGAGCTGCTCACTGGAAGCCCCCCGTTTTCAGGGTCAGACCCCATTAAGATCTACACTATGGTGCTACAGGGGATAGAGAAGGTGGACGTCCCCAAGCGTATTGGCAAGCGGCCTGAGGATCTGATTAGGAGACTCTGCAAGCTAAACCCTGCCGAAAGACTTGGAAACAAGAAAAATGGAATCAACGATATAAAAAAGCACAAGTGTCATTTTTGCAGGTGGTTCCAAGGCTTCAACTGGGAAGGGCTACGAAGAAGAAAGCTATCTTCCCCACTAAAAAGAGAGCTGAAAGGGCCAACGGACCACAGCAACTTTGACATCTTCCCCCCAGAACTAGAGGAACCCCCAGACGAGCTCTCGGGCTGGGACAAAAACTTCTGA

Function

GO: NA

KEGG:

id description
K07376 PRKG1; cGMP-dependent protein kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177049 lncRNA downstream 8507 11598058 ~ 11599956 (-) True G140742
TU176996 lncRNA downstream 274779 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 300074 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA downstream 300074 11305471 ~ 11308389 (-) True G140648
TU176821 lncRNA downstream 500859 11107396 ~ 11107604 (-) True G140588
TU177066 lncRNA upstream 2776 11625425 ~ 11626381 (-) True G140756
TU177075 lncRNA upstream 163765 11786414 ~ 11789926 (-) True G140764
TU177074 lncRNA upstream 173327 11795976 ~ 11797014 (-) True G140763
TU177212 lncRNA upstream 734797 12357446 ~ 12362204 (-) True G140883
TU177234 lncRNA upstream 980173 12602822 ~ 12603031 (-) True G140904
AMCG00003105 mRNA downstream 46158 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003103 mRNA downstream 130079 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003101 mRNA downstream 152810 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003102 mRNA downstream 234415 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003100 mRNA downstream 335789 11253483 ~ 11272674 (-) True AMCG00003100
AMCG00003114 mRNA upstream 177006 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003113 mRNA upstream 185261 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003118 mRNA upstream 309817 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003117 mRNA upstream 315068 11937717 ~ 11962072 (-) True AMCG00003117
AMCG00003119 mRNA upstream 386967 12009616 ~ 12051093 (-) True AMCG00003119
TU176570 other downstream 1277091 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2370733 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2760623 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 3113867 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3670222 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 18167 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 71357 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1228372 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1228372 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1228372 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile