RNA id: TU177065


Basic Information

Item Value
RNA id TU177065
length 284
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00003110
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11608463 ~ 11622649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGACACGAGGAGTACTTCAGCTTTCTATGCAGTGTATCTTTATTGAAAGACTTGCCTGAAGAAAAGCTTGCAAAAATTGTGGACTGTCTGGAAGTGGATTATTTTGATAAAGGAGATTACATCATTcgtgaaggagaagaaggaaacACGTTCTTCATCATAGCGAAAGGAGAGGTGAGTGTCACACAGACCATGGAGGGATCATTGGAGCCCCAGGAGATAAAAACTCTAGGGGTGGGAGACTATTTTGGAGAAAAAGCCCTGATAAGGTAAACATATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177049 lncRNA downstream 18833 11598058 ~ 11599956 (-) True G140742
TU176996 lncRNA downstream 285105 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 310400 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA downstream 310400 11305471 ~ 11308389 (-) True G140648
TU176821 lncRNA downstream 511185 11107396 ~ 11107604 (-) True G140588
TU177066 lncRNA upstream 5499 11625425 ~ 11626381 (-) True G140756
TU177075 lncRNA upstream 166488 11786414 ~ 11789926 (-) True G140764
TU177074 lncRNA upstream 176050 11795976 ~ 11797014 (-) True G140763
TU177212 lncRNA upstream 737520 12357446 ~ 12362204 (-) True G140883
TU177234 lncRNA upstream 982896 12602822 ~ 12603031 (-) True G140904
AMCG00003105 mRNA downstream 56484 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003103 mRNA downstream 140405 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003101 mRNA downstream 163136 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003102 mRNA downstream 244741 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003100 mRNA downstream 346115 11253483 ~ 11272674 (-) True AMCG00003100
AMCG00003114 mRNA upstream 179729 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003113 mRNA upstream 187984 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003118 mRNA upstream 312540 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003117 mRNA upstream 317791 11937717 ~ 11962072 (-) True AMCG00003117
AMCG00003119 mRNA upstream 389690 12009616 ~ 12051093 (-) True AMCG00003119
TU176570 other downstream 1287417 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2381059 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2770949 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 3124193 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3680548 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 20890 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 74080 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1231095 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1231095 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1231095 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile