RNA id: AMCG00003111


Basic Information

Item Value
RNA id AMCG00003111
length 1715
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00003111
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11786422 ~ 11797059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAATCAGGGGGcgttttctgttctttttctccTGAACTGAATTTTTCCCCTCGCCAGCATCAGTAGCACACAGGCTGCGCTGGAGGAGCATGCATTGGTTGTTgcctttagtttaaaataacGGAATATACgagcatagagagagagaggaaaaaaaagagaaactccTTGGGGATTTTAAAGGGAAACCTGGGCCTTCACGTGATTCGGTAGcggagaacaaaaaaaagTCCCCTGGGTGCCCGAATCCAAGAAAGAATCTCGTATTTGTCCTCTGtaggagagagggagtgagaaagGATGTCAGCaagagggggaaagaaaaaaagcaccaAGCAGTCCCGGTCTGCCAGGGCAGGGGTCATCTTCCCTGTGGGCAGAATGATGCGGTATCTGCGCCACGGGACACACAAGTACCGCATTGGCATGGGGGCACCAGTCTACATGGCAGCCGTCATAGAGTACCTAGCAGctgaaATTTTAGAATTAGCTGGAAACGCAGCAAGAGACAACAAAAAAGGCAGGATAACGCCAAGACACATCAAGCTTGCCGTAGCCAACGATGAAGAACTTAATCAGGAGAAACGGGCAGAAAATAACAAAGAGGGCGCCTCCAGCTCCACTTCAGATGATGGACCTGGAGATGGTTTCACAATCCTCTCCTCAAAGAGCCTTTTCCTGGGGCAAAAGCTTTCACTGACTCAGAGTGATATCAGCAAAATCGGATCCATTAAAGTGGAGGGAATCATCAACCCTACGAATGCAGACATTGACCTAAAAGAAGGAGTGGGCAATGCTCTGGAGAAGGCTGGAGGCAAGGAGTTCCTGGAGGCAGTGAAAGAACTGCGGAAATCCCACGGGTCCCTGGAAACGGCAGAGGCTGCACTCAGCCAAGCCAATGGACTGGCCGCCAAGTTCGTCATTCATTGCAACATCCCTCAGTGGGGCTCAGACAAGTGTGAGGAACAGCTGGAGAAGACGGTCAAGAACTGCTTGTCAGCTGCTGAAGACAAGAAGCTCAAATCCGTCGCTTTCCCCTCCTTCCCCACTGGCCGAAATGGTTTTCCGAAGCAGACGGCGGCCCAGTTGATCCTCAAGGCTATCTTCAATCATTTTGTCTCCTCGACATCATCCTctctgaaaaacatttactttgtcTTGTTCGACAGCGAGAGCATCGGCATCTATGTGCAGGAAATGGCCAAGCTTGACACCAAGTAAGGAAGACCggggtgtgttttgtttcacagtTGTAATAAAGTATCAGTTGGATTTTTAGCAGCCAGCATAGCGTGGGACAAGCGGATTATTGAagtagaagaaacaaaaatggctttttataacaaaacaaaaggttgAGGTAGTTTTGTGAGAAAAAAACAGatccgtgtgtgtgtgaagaagtacTGTATGCTTTTCAATTACACTGTTTTCTAGTCTCCTATCAAAAGTTAGTTAGAGTGGATAGAGAACTGAGagtttctaattttaaaaagatggcCCATGACcccatttcttttattttgggtttgtttctttaactGATCGGTTCTTACATTCCGTGTACAAAGAGAAATTTTAAAAGACTGTTATCTGTTCTTTCCCATGAATATCCTTAGTAGTTTCTGATACTGTTAgtttactaaaaaaaataaaaataaaaatgtgtgtttgacattctgctttaaaataaaaacagatgtttgACTCCATA

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177044 lncRNA upstream 152897 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 248468 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 295760 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 305385 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 539144 11245256 ~ 11247278 (+) True G140632
TU177186 lncRNA downstream 357754 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 488988 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 574940 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 587617 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 1024816 12821875 ~ 12824630 (+) True G140961
AMCG00003107 mRNA upstream 186380 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003109 mRNA upstream 237634 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003108 mRNA upstream 282418 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003095 mRNA upstream 429692 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003093 mRNA upstream 455296 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003112 mRNA downstream 5952 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003115 mRNA downstream 100901 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003116 mRNA downstream 127268 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003122 mRNA downstream 204975 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003120 mRNA downstream 324985 12122044 ~ 12130905 (+) True AMCG00003120
TU176980 other upstream 298538 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 574311 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1029582 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2005970 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2455958 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 576907 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 933672 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1081626 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1309397 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2383721 14180780 ~ 14184643 (+) True G141331

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000014_01038876_01053268.mRNA True 3278 mRNA 0.46 8 CI01000014 1037623 ~ 1054033 (+)