RNA id: AMCG00003112



Basic Information


Item Value
RNA id AMCG00003112
length 993
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00003112
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11803011 ~ 11806356 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCCAGTCTGACAGTGAGATTTCCTCCTATCACCCCAGCGAGGTCACTCTGGACCGTGGCTATACCTCAGACTCTGAGGTCTATGCAGAACATGGAAAGCAGTCCAAGATGCATCGCTCTGTCACTGACATAGATGTGGCCAACAGTGGCTGGTTAATGGTTGGGAAAGATGATATTGACATCAGCAAGTCTGTGGCACCAGGGACCAAAGTACAGAGCTCTCCTTTGGTCAACCAGTACAGCCTGACTCTGGGGCAGGACATGGGCCTGCACGACACCAAGTCCCTCATCAAGTGTGTGGAGTCTCTGTCCTTCATTGTCCGAGACGCTGCACATGTCACGCCGGAGAACTTTGAGCTCTGTGTCAAGACTATCCGAGTGTTTGTGGAGGCTGGCCTCAATGGAGGGTACAAGACACACGAAAAGAAATCTAAGAGCCATAAGTACGATTCCAAGTCAAACCGGTTCCGGAAGAAGCCCCGGGAGAAGGACTCCTCTGTGAAGAGGCCCAAGGTGTCCAGCCAGCGCTTCTCACGCTCACACAGTGATGATGAGGAGGACGAAGGGGTTCCTGCCAGCTATCATACGGTGTCTTTACAGGTTAGTCAGGACTTACTTGACCTGATGCACACCCTGCACACACGGGCGGCCAGTATCTACAGCTCCTGGGCAGAGGAGCAACGCAATCTGGAGGCTGTAGGCAAGAAGATTGAGGCTGACTCTCGAACACTGTGGTCCAGCTGCTGGTGTCCTTTACTACAAGGGATTGCCTGGCTCTGCTGTGATGCCCGGCGGCAGGTACGAATGCAAGCTCTGACTTACCTGCAGAGGGCGCTGTTGGTGCATGACCTTCAGACTCTGGATGCTGTGGAGTGGGAGTCCTGCTTTAACAAGGTGCTGTTCCCCTtgctcaccaagctgcttgatAACATCAGCCCTGCGGATGTCGGGGGGATGGAGGAGACCAGGATGAGGGCCTGCACACTGCTGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177044 lncRNA upstream 169486 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 265057 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 312349 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 321974 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 555733 11245256 ~ 11247278 (+) True G140632
TU177186 lncRNA downstream 348457 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 479691 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 565643 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 578320 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 1015519 12821875 ~ 12824630 (+) True G140961
AMCG00003111 mRNA upstream 5952 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003107 mRNA upstream 202969 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003109 mRNA upstream 254223 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003108 mRNA upstream 299007 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003095 mRNA upstream 446281 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003115 mRNA downstream 91604 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003116 mRNA downstream 117971 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003122 mRNA downstream 195678 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003120 mRNA downstream 315688 12122044 ~ 12130905 (+) True AMCG00003120
AMCG00003121 mRNA downstream 327769 12134125 ~ 12153351 (+) True AMCG00003121
TU176980 other upstream 315127 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 590900 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1046171 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2022559 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2472547 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 567610 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 924375 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1072329 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1300100 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2374424 14180780 ~ 14184643 (+) True G141331

Expression Profile