RNA id: AMCG00003115


Basic Information

Item Value
RNA id AMCG00003115
length 2626
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00003115
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11897960 ~ 11911506 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGAGGCTGACGGCCCCAGTTATGGATTTTAACCTCTTGACGGACAGCGAGGCCCGCAGCCCGGCGCTCTCCCTGTCCGACTCCGGAACCCCTCAACACGATCAAGGATGCAAGGGCCAAGACAACAGCGaTACAGAAAAATCCCATCAAAACCAGACGGACGAATCTAATGCGGAGGACGGGTCCCTGAAGAAGAAGCAGCGCCGGCAACGGACCCACTTCACCagccagcagctgcaggagctggaggccACCTTCCAGAGGAACCGCTACCCCGACATGAGCACCAGGGAGGAGATCGCCGTGTGGACCAACCTCACCGAGGCCAGGGTCCGGGTGTGGTTTAAGAACCGCCGGgccaagtggaggaagagggagcGAAACCAGCAAGCGGAGCTGTGCAAGAATGGCTTCGGGGCTCAGTTCAACGGACTCATGCAGCCCTACGACGACATGTACTCGGGCTACTCCTACAACAACTGGGCCACCAAGAGCCTGGCCACCAGCCCATTGTCAGCCAAAAGCTTCCCCTTCTTCAACTCAATGAACGTCAGCCCCCTTTCCTCGCAGCCCATGTTCTCACCCCCCAGCTCCATCTCCACCATGAACATGGCCTCATCCATGGTGCCCTCGGCGGTGACCGGCGTTCCCGGCTCAGGCCTCAACAACCTCAGCAATCTCAACAACTTGAACAGCCCCACCCTGAACTCGGCCGTGTCTGCCAGCGCCTGCCCCTACGCCACCACAGCCAGCCCCTACATGTACAGAGACACGTGCAACTCCAGCTTGGCCAGCCTCAGACTGAAGGCCAAGCAGCATGCCAACTTTGCCTATCCAGCGGTGCAGAACCCGGTCTCCAACCTGAGCCCTTGCCAGTACGCAGTGGACCGACCCGTATGAAGACACTCCCTAGTGACTGACTCAGAGTTACCCCACAACGAATGACTGGTTCATGACCTTTTAAAAGAAATacctatataaaacataaaataacgtATGCCTTGGGAATCTCTACCGAAATAAGCTtctagaaaaaagaaaaaaaaaaacattttatggtGGACCACTCATACGTTTaaagattttttcttctttttctttttttaacctgaGGAAAACTGACCAACTGTTCGAGGGATTTTGAAAATTTCCAAAATGTCCACATCATTATTTTGACCGCATGGCCAGAAAAATATGCGTTTGGCAATACGATGGGCGCTTTTTGATATCGATGTTGGCGTACAAGCAAACATGCATGGCCGTTACAACCAGTACAATGGGGACCTGTGGTTGTAATATGGGCTAGAGGATGTATATaatggactttttttttgttttgtatgtgaaaTAATTATCTATACAAAGTAGTACTTTTGATGAAAAAAGCATGTTCTTCAAGAGCAGAACCTAGATCAATGTACTATGAGTACATCCTTAGGAATTTTAATCTTTGTTATGAATTCCATTGCCTCAGCAGGTCAAAGGGCACCGTCGACTCAAAGAAGAATGTCATGGGCATTCTCCGAAAACAATTTCACATCTGCCAGAGCAGGAGATTTAGACCTTTGAAACGAAGAGAAAAGCCATTAAATATATTGGGTTGTTTGGTGTCACACAAGAAAGGGAGTCCAttctgaaaaaatgtatgtaagagTGAAGTtgttataaaataacattttccagtGTAGCCTGCTTTGTCTAATTTAAAACGGATACTGTTTATCAATATCACATGtataagaaaatattgtttatgaAGTTGCCAGTTctcttcatgttttaatttcttactgATGACCTCTGAGTGGCATTATACTGATGATAGATATAATCTTGTTACGGATACATTTGACCGATGCTTGGACAGACAACCTCAGTGTACAAAGGCTATCCAGTAATGGTCAAGCAGGTTTGGTCCTGTGCCTTATGTTATCCAGGCCCATGCCAGCATTATGTAAGTTAAACAGTGTGTAACTGGACCTCATGATCAGCTCATTTGAGATCCAGCACACTACACAAGTAAATTCATACTCCAAGCAAATGAAAGCTTTCCTTTACATTTCAAGTGACTGCAAGAACAGCCCTTTAGTCACTCTCACAGCACAACCAAACCTCACATGCATTTCTACAGAAATGTTAATTCTAAAGGTTTtcacaagtatttatttttaagcatttcagTAGCAGATCTCTGTGCCGTTTTGGTGTAGAATACAACATTGAGCTTTGATAAGGTGTAtctcactgtctctgtgtcaCCTACCCATAACCTCAGTGGTATCTGAAAATAGACTTTAAACACCAGGGTCTTTGTTTTTGCCTCAactgacagaaaacacaaagagaaaaacagtttATCTGCATCCCTTCAGTTTGTTAGTGTGGGTTCCTACAATGCTCTGATATGTGTGCTTGAAACAAGGAATGACCAGTGTTTAACTAACATAATGGTGTAACTGAACTGATGAAGACCAAATTatcatatgtataaaaaaaaaagaccaaaggGATATTCCACATTAAGGAGCAAACCAAATTCTCATACAGTGTCGCTATTTCTGTCATTCTAATAAAATTCagctttgttttcatattatatGTCCTCGAGCTTGTTTCAGTTGATA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09357 PITX3; paired-like homeodomain transcription factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177044 lncRNA upstream 264435 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 360006 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 407298 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 416923 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 650682 11245256 ~ 11247278 (+) True G140632
TU177186 lncRNA downstream 243307 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 374541 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 460493 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 473170 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 910369 12821875 ~ 12824630 (+) True G140961
AMCG00003112 mRNA upstream 91604 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003111 mRNA upstream 100901 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003107 mRNA upstream 297918 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003109 mRNA upstream 349172 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003108 mRNA upstream 393956 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003116 mRNA downstream 12821 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003122 mRNA downstream 90528 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003120 mRNA downstream 210538 12122044 ~ 12130905 (+) True AMCG00003120
AMCG00003121 mRNA downstream 222619 12134125 ~ 12153351 (+) True AMCG00003121
AMCG00003125 mRNA downstream 323051 12234557 ~ 12239380 (+) True AMCG00003125
TU176980 other upstream 410076 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 685849 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1141120 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2117508 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2567496 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 462460 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 819225 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 967179 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1194950 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2269274 14180780 ~ 14184643 (+) True G141331

Expression Profile