RNA id: AMCG00003117


Basic Information

Item Value
RNA id AMCG00003117
length 5816
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00003117
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11937717 ~ 11962072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGATTCAGTTTCTTCTGCTTACTCATCTCCTGCGAAGAGCTTGGGGGATCCTGGGATCACACCCCTGTCTCCCTCACATTCTTTGAAAGATCCTGATCAGAATGTCCCGGAGGGGCCGTCGTTCACGGTGGTGGTGGCCATCGATTTTGGCACCACGTCCAGTGGCTATGCCTACAGCTTCTCCAAGGAGCCGGAGTGCATCCACACCATGAGGCGCTGGGAGGGAGGAGACCCTGGGGTGTCCAATCAGAAGACGCCGACCACCATCCTTTTAACCCCAGAGGGGAAGTTCCACAGTTTTGGCTATGCGGCGCGTGATTTCTATCATGACCTGGACCCCAGCGAGTCCAAGCACTGGCTCTACCTGGAGAAATTCAAGATGAAGCTGCACACAACTGCTTCTAGCCTGGTTTCCCCTGACAACCCTGAGCAACTTATAATCGCTCTGGAACCGGAAGCTGCTTCTATCTACTGCCGGAAGCTCCGCCTTCACCAGATGATTGACCTGAGCTCTAAAGCAGCTGTGAATGGCTACAGTCCAACAGAAAGTGTGGGAACCACCATGGCACAGGCCAAGGAGCATGTCCGTCGCAACCGGCAGAGCCGCACCTTTTTGGTGGAAAATGTCATAGGAGAGCTTTGGTCGGAGCTGGAAGAAGGTGACCGATATGTCGTGGTAGATTGTGGTGGGGGCACAGTGGATTTGACCGTCCACCAAATCAGGCTGCCTGAAGGTCATCTCAAAGAACTGTATAAAGCTTCAGGGGGTCCATATGGCTCTATCGGTATAGACTACGAGTTTGAGAAGCTACTGTGCAAAATCTTTGGGCCAGACTTCATCGATCAGTTTAAGATCAAGCGACCGGCTGCCTGGGTGGATCTGATGATCGCCTTTGAGTCCCGGAAGAGAGCAGCAGCGCCAGAAAGGACCAACCCCCTGAACATCAACCTGCCCTTTTCCTTCATTGACTACTACAAGAAGTTCAGAGGCCACAGCGTGGAGCACGCCCTGCGGAAGAGCAAtGTGGACTTTGTGAAATGGTCCTCCCAGGGGATGCTTAGAATGAACCCAGACGCCATGAATGCCCTCTTTAAGCCAACAATAGACCACATTATCCAACATCTCACTGAGCTCTTCGAGAAGCCGGAGGTCTGCGATATCAAGTTCTTGTTTCTGGTGGGCGGCTTCGCGGAGTCCCCTCTGCTGCAGCAGGCCGTGCAGACCATGCTGCAGGGCCGCTGCCGCATCATCATCCCCCACGACGTGGGCCTCACCATCCTGAAGGGCGCGGTGCTGTTCGGCCTGGACCCCAGCGTCATCAAGGTGCGCCGCTCACCCCTCACCTACGGCGTGGGCGTCCTCAACCGCTTCGTGGAGAGCAAGCACCCGGCGGAGAAGATGCTGGTGAAGGACGGCACGCGCTGGTGCACCGACGTCTTCGACACCTTCATCACGGCCGACCAGTCTGTGGCCCTCGGGGAGACGGTCAAGCGCAGCTACACCCCCGCCAAGCCCTCGCAGctcgtcatcatcatcaacatctaCTGCGCCGAGAAGGACGACGTGGCCTTCATCACCGACCCCGGCGTGAGGAAGTGCGGCACCCTGCGCCTGGACCTCACCGGCACCGAGAGCCCGGCCCCACGCCGTGAGATCCAGACGCTCATGCAGTTCGGGGACACGGAGATCAGAGCCATGGCCGTCGACGTGGCCACCTCGAAGACCGTGCGGGCCAGCATCGACTTCCTCAGTAACTAACACTCGCTGCCTGTGCAGCCCGTTCCACTGGAAGGGCTTGTAGTTGGAGGGAGGAAAGGTAAAGTGTGAGATATAATCTGTCAAGAAAGCTTCACAATTGGTTTAGCTGTGAAAACCtttgttaaacacattttagcAGTTGCAACCCAGCTGTTTACATAGTTACAAAATaagctgttttgttgttttgtttttttaagcaggccattattatttttttgttgttgaatgattgtttacttttaaaagggGATATCTGAGACTTATTTTAAACACTACTACTGTTGAGCCAAATTACcatttacatataaacattatttttttattagtagtagtagttgtagtagtcatatttgtattcttattatCTTAGTTTCTGATGATAAtgctgacaaaacaaaaataccccGTTTAGAAATGCCTTTACAGGATACGTATAGGCTGCTGAATGTGATGTACTGTATACTGCAAAGAACCTGACCTGCGATAGGAGCATTGAATAGGAACTGCACAGGAATTGGAGCGGTGCGTCTCATTTGCCACAGTCCTCCTGTACAGTTGTCAACACCACTGGTATGCACATTGGTAATAGCCTCGTCAATCCTagaatgtgaaatgtttcaaaagaaaataggAAAACTGAAAGCTAAGTAGAGAATGCTGCTAGCTGTACTCGCTAACTGTTTTCAATATGGCTATAGCAATATGCTTGCTGCCTTTGTTTCTTTCTGGCTGCCACGCAATGGAGAAAAAAGCCACTATTTGCCAAGCAGCTTTGGGATTggtaaataacaaaatacttatttttgtttatttctgtaaatacagtatttaaaccattgtacagttgttgttttttattctgacTTTAGCAGCTTTAGAATTTGACAGTATGCTTGCTTCTGTGGATACTTCTGTTATATTATTCTCACCAGCCAGTATGTGatctaaaaaaatgaattctgaaGCTGAAGATGTATTGgccaattaaaatgaaagcatggGTTACTGATATGTTGCTTTTCTTTGGCTTTTAAATGTGAAGCTAGAATACCTGTGACATTCAACAGgatttttattctgaaactaAATCAAGCTGAGGTAAATTTAGTAGGGTATTATGTTTGTAGGGGGCAGTTTCCATTGGGGACATAATGATAAGAAAAGggcatttaaaatatagtttgaGGAATGACACAATGTATGTTCTGGTTGAAGAAACTTAGCTTCACACCTGATTAGGAATTGTCCAACATAACACAACTTTCAAGTATCCATGTCTGTGCCTGTAAGGGAAAATGTGCTTTATCATCCTATTGAAGGAACTTACCGACAGCTGTTTCAAACTTAATGCTacacataaaatgtattctcaATTTTAAGAAAGTCATTCAAAGTTAAAGGTGTGtatgcaaaatatacataatctTAAACTGTTTAATTGTGATCACAATGCTTTGAAAgccattctgtttttttatgtgttttatttaaaacaaactggatAATCAATGTATAATCACAAATGTCACAGAAATATCTAGAGTTCAGTTAGCACACCATTAGCAagtactgatatatatattactaatgGCCAGTATTCATaccaaatataatatataaactgcaataaataaaaatgtaaacatgttatTACATGGTCAGTATCTTGAACCATTCGATCTTACCTGGTAGTTTTCCCGATTTGTGCCCACAGATCAGCATCGGTTTTATCTATGTTCTTGTTTGTATAAGTTAACTGTTCCCATCTTAATATCCTTTcccaatatattttgtgtgatttgcttacttttaattttcatcgctttattattttattacattgtttttcattaatttttgGTGTTAATCTGAATGTTATTTTATCCAGTATCACAACTATGACATTTAACAGACGCTTCTTTAATGTGCATAATTCATTTTCTCATAGTAAACATGACATTTGAAAGATAATGTGCAGATGCTTCTAAAGAGGGAAAGCTGGTCATGATCATTTGAATCTTTCAACTTTGCAGATTTGAGACATTGAAAATTACTATAGATTAAACAAATCttcttttcaaaaataatacaaaagtaccattttcaaaatgtgttgcatGGAAAAGCCACCTGTATGGCCATTTGATCTCTATAGGGTTAGACTCAAATTGCTTTCATCTGTGGTGTCGTTTCATGTGACTCAAGCAGTGTTTGAGCAAAACAGCATCATATCCAGTAAATGTGGTTGCGTCAGATTTCCTAGTTATTTCTCACTCCACTTGCCTTTCAAATCATCCctttaatgtttgtgttgatCTATAAATGTACAGCCTAGCATGGCAAGTCTCATCCTGGTGCTTGTAACTGAAGTAGTCTCCGgtgtttcacaaaagaaaatgaaaaaacatttgggCATTCTATATTGAAACTATTTTCAGtaatgttttttagtttctgGTGAGATTGAATTTAGTTGTGTCAAAACATGAATGTAGTTCAATTCTCATTTATTCAAAAGCTTTGTCAAAGGAAACTGCCTCCGATTTCTCTCCTGCCCTGCACTGTCAGCAGCTTCTGGTATACAATGAATTGCCTGGGTGGTGGTGTTATCTGACAGATAATTATGTGATCTTCCCATTGTAAGCACTTGATAgaagctttgttttgtgttcttcaaAAATTAGAAATGCTGTGGCAACCAGGATTCAAAGGTGACGCAGCACAACGTTTATTGTGCCAGTGCATGGGCATCCTgttcttacattttcatttggattTCATATCTATCCTTGTTTGATAATCGAATACTTGTGATTCATGCTAGTgtggttatttttcttttttgttttgtgctatGTGATTATATAATCTTTTAGCATTCCCGAGCTATCGTGAAAGAAGGAAAATAGTTTCAGCCAGGATTGGATTTTGTGGAGAGATTTTGCAGGCAGTATAGAAATAAGAATCTGATTTCGACTCTCTGAGCAGAGTTATGAAAATGGAAGAAGGAGCAGATTATTTAGAATCACTTGAAATAATCTTTTACCAAAGCTAGATGCATCAAGTTTTATAGTAAAAGATAGTAAACTGCAGTAATGTGGAGACCTAGATAAGTGTACTGAAGTCTGTGCTGATGTGTGTGATGCCAATGGcaatctatcttttttttttgactgACAGTTCATATTTCTGACATAGTGGCGTACTCTGTATCTCAGTGAAAGAGACGTCTAACACTTCCATCCGCATATGATTTAATCTGTTCTGTAGATACTGTATTTTGATGTTATcatatgttttctgtttcactGAACTTTGTAAATTGCTGTATACTCGAGTGGGAAAAGCTTTTGCACTGAACAGTGTAATGTTGTGTATGACCTCCATTCTCTTGTCCACTGTAGTGTGCagtttttattctttcaatGTGTTGCAGGCCGTCTCAAACAAGTTTGGAAAAGTTACACAAAAGTATGACATTCATAAAAGGTGTATGCCATAAACTAACACCAAATAAAAAACTGGAATAGTTAAAGAATCAACGAATGTGTacacttaaaatgaataaatacaaatattatgtgTCAAGGTAGGTAACTTTTTGTGACCAGTTCCCTCTTGTGTCCATACTGCCCTTCTTGGCTGTATTCATACAAGTATAAATTCCTAATCCACACTGACTGAACTGCAACCCATGTGCAATGTCTAAAGGACAAGAAAATGACATCATGCATGACATCACAATCTGAGCAATACAGAGAAATGTTCATTAATAATGTGTCTTAAAAAACATGATAAATATTGCAATTGATGCGAAAATGCTTTGTAAGCAAAACAATCCAGTATGGTGTTCACATATCATGTTTCCACCCTAGAAAAATGGTGCTTTGCGTATATGTACGAGCTTTAAGGGGAACTGCCCGCACTGAAGAGCGACAGCTGGCAAAGCTATATAGTTGAAGCTGCAAACTGCTTTACAGACATAGAAATTACATCACTATTTATTTGCCTGGAGTCTTCCAATTATACAACAATAAATGGAAATACAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177074 lncRNA downstream 140703 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 147791 11786414 ~ 11789926 (-) True G140764
TU177066 lncRNA downstream 311336 11625425 ~ 11626381 (-) True G140756
TU177065 lncRNA downstream 317791 11618789 ~ 11619926 (-) False AMCG00003110
TU177049 lncRNA downstream 337761 11598058 ~ 11599956 (-) True G140742
TU177212 lncRNA upstream 395374 12357446 ~ 12362204 (-) True G140883
TU177234 lncRNA upstream 640750 12602822 ~ 12603031 (-) True G140904
TU177236 lncRNA upstream 643680 12605752 ~ 12605952 (-) True G140906
TU177299 lncRNA upstream 766202 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA upstream 766202 12728274 ~ 12739791 (-) True AMCG00003138
AMCG00003118 mRNA downstream 2318 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003113 mRNA downstream 116403 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003114 mRNA downstream 134845 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003110 mRNA downstream 315068 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003105 mRNA downstream 375412 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003119 mRNA upstream 47544 12009616 ~ 12051093 (-) True AMCG00003119
AMCG00003124 mRNA upstream 91808 12053880 ~ 12073797 (-) True AMCG00003124
AMCG00003123 mRNA upstream 128081 12090153 ~ 12098413 (-) True AMCG00003123
AMCG00003126 mRNA upstream 196738 12158810 ~ 12163340 (-) True AMCG00003126
AMCG00003127 mRNA upstream 400190 12362262 ~ 12385026 (-) True AMCG00003127
TU177067 other downstream 203955 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 290098 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 1606345 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2699987 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3089877 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 888949 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 888949 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 888949 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 899354 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 1465222 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile