RNA id: AMCG00003119


Basic Information

Item Value
RNA id AMCG00003119
length 4847
RNA type mRNA
GC content 0.41
exon number 18
gene id AMCG00003119
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12009616 ~ 12051093 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGGTGCTACACCGCAGAAACCAGGCGTGCTGACGTCATCAGGGAACGCAAGGTGCGCGGCTCAGGTGACCGCACTTTTCACTTCCTGGTAGCTCTGCTGATGTCCCGGGACAGAAAACCCCTACACGGCTCTGAAATGGCGAATGTGgaagaaataaagcaaatggAGATTATTACACATCTATCAAATAGAGCTATAAATGAGTATGAAGGACTCCAAAAACAACACGAGAAAACCAAACTAGAGaatgaAAGCATAAAAAAAGAGCGGGATGAGGCTGTGAAGAAATTGAAAGAGTTTCAGAGACTTTCCCACATGGTGATCGAGGAAGTCAGTGTCATTCAGGAGCATCTGGACATTGAGAAATCCTGCAGAGCCAGTGCCGAAGCTCTGGCAACTAAGAGGAAGAGCATGTTGTACCTGTCTCGCCTGGGGCCGGAGGTGATCACTGAGATCAGCCTTGAAGATGAGGATGCGGCTATGGAGAGTGAGGAGAGCCCAGCCATGTGCTCCTCTACTCACTGCCAACATCAGATCAAAGAACTACAAAGTAGACTAGACTCGacactggaagaaaaaaaaagaatagcaaATGACCTGGAGGTCTTAAGAGAGAGGCTCGGGGAAGTCACAGAGGAACTGCTTAAAGAACGacaggaaaacattgttttgattGGCGAGACAGTTCAGCAAAAGAAGCTCTTGTCAAAATATAACAGAGTGTCGCTGCTTGCAGTGGAGGAATATGAAGAGCTACAGGGCAACCTGGAGCTTGAGAAGGACCTTCGCCAAGAAGCGGAAAACTTTGCAAGAGAGATGCTAGTGGAGCAGAAGAAGCTGAGCAGACAGAGCCACATCCTGCTGCAGAACATCTCCCCTGCGGAGCAGCTGCTGGGCGCCCTGGAGGACGTGTCCCGACTGACCCAGGCCCTGGAGACGGAGAGGTTGGAGCACCAGCAGCAGATGAAGGCGGTTCAGGAGCAGCTCCAGGGCTCAACGCTGCAGAAGGAGGTGGTGGTTCTGCAGCACAAAGCGGAGTTGCTGGATGAGGAGAAGAAGGAATGGGAGAGCAAGTGCCACAGGGCCGAGCAGCAGACCAAGGACCTCAAACACACAGTGGAGGAGCTACAAAAGCAGCTACGGCTTGCTGTCAATCCAGTTCCTGCTCaggccccccccccaccgccgcccccgccccccccaccgcccccaccaccaccatcatcatcttCCAACCCTCTCAGGTTGCCAGACTCTGCGCAAAAGGAAACTGGAGAGGAAGTGCCAGACGTGAGGCAGCAGGCTGTGGAGGAAATGATGGAGAGAATTAAGAAGGGTGTTCACCTGAGACCTGTGAACCAGGTGGCCAGAAGGAACCGAGCCGCACACAATGAAAGGAATCCATCAAGTTCTGCTGTCCAGGAGCTGAAGGGGATTCTGAACACATTCAAGAGCCCCTCTCCATCACGGCACATCGCTGTGCCTGGAATGGAGTGCACCGAGACTGAGCTGGAGAGAGCGTTGCAGAGACGGAGGTGTGCTTTTAAGCTGATGGAGCAAAACTGTTCACAGTCGACACCGAGCGTGTTCCCCAGCAGCGTCTCTGACATCGTTAGACTGAAGAAGATCCAGCCGAAGCCAGAGCCCAGCGTGGAGGAGCAGCCAGAGCCGcctggacacacagacactgccgCCAGCAACGCCCCGCAGCCCCCggacACACAGAGTGGAACCTCGATACATACTGAAGAGAGGCCAACTGAAGATCGAAACAAGAAAAACGGAGAAGTAACAAGTCATGAAAACGGCACTGAATCAAGTAGCACCtgctgattaaaataatatgcacaCAGAATGTGTTATATCCAGAGTCTGAGGCAGTGCAGCAGTGTTTCGAGGTACAATACACAACATTAACACAACATTGTGACCAATGGAGTCCAGCGGGACTTGTTTGTATCCTGTTGGATTTATTTCAACCACATTTTGAGGGAGATTTATTTGGcctacattaaaatgcaaagagaGAGGGGATAATTACTCTCTGCATTTACAGTTACATAGAAAAAACTTTATTgagatgtatacatttttttttatccaattttattaacagatattatttttgtttataatgatTTTTTCAGCTTTGATGTCTTCTGCATTGtgccaaaaatacaaatacaagtacTACTCTTTTGACCACAGTTATATAATTACAAGTTAGatcaatttgaaatgtacagGTGTAGGAATTGTAATGTCCATAAGCATGAATGGAGTATACAGTGGCCTCCACATGTATTCATACCCTTGATAGattgtaacaaaataattgaacagACGAAAAACTattgtacaatttttttttttttttccaaataatacTAACACTGCAGTTTGTTTGTCAGAGGCAGATGCTTTGCCCAGGAAAAGTTATAGTTTAGATGTTATCGCCTTGTGAACCTGAAGGAGAGGCAGACACCAACTCCCACCCAAACAGTGCATAACCGCAAGCAGCTCTAGTTCAAAGTATCAAACTGAATTTGCTGAATTGAGTTAAAAGTAATGTAgcaattaaactgtaattgCTTTGTCACGAACCTATTTGGAAAATGactgaaacaaataattaactACTGATGTGTGTTAGTACATTTATTGCATGTTATTTTgtggaaatggagaaaaaatattttccaaatagGAATGAAATCTGTATAATTGATAATTACATCTGCAgctttgaatgaaaaaaataacttattgtGATGCATTATTTTGGGCTGGGGAAGTGCTTTTGGAGATGTCTCTTGTGTCTTGTTCAAGTGCAGGGAATTCATGTTCTTCTGTAGAACCTGTAAAGATGATTAAAACATCTTCATGAGCAGTAACGGCACGGGGCATTTACCTGCATACGTACTGCCAGCATCACATTTGGTATTTGGGATTGTTTTAGTGTTTACACTTGAGAGGAGACGAGGGAAAGCAGTGATTAGTGCCAGATTTATCATTCTAGTTAGCTTTTCATTAggatattaattaatgagtttaaaaaaaatacagaatagaAAGTACATAATACCCCAGCagctttttgttgttatttaagatttaaaaatataaaatataaaatatatatatatatatatatatatatatatcattttgttAGAAAGATGAACTCATTGTTCAATAATGGTGCAATGTCCTTGTATTTTAGGTGTAATTAGGTTCCCAATTAACGGAACCAATGTACATTTTGCCAGATCCTTTCCTTATGATTCCTGACACAGAGTTTCTTTTATAAACCCAAAGAAATACATTCTCACCAGCTGAGCAATTTCTGTTGCTCCTCCCTGGCCTTTGTCTATCTTTTTCTACGAGTTGAAAAGACATAAAGAGAAAAAGCCATACCCAGTATTCCCTGCTGAGCCAATTCTTCCTCTATAGAAATCAGACGGCTGTATTTAGTCACCCTCTCTCCATGACACAGACCTCCCAGTTTGACAAACCGAACTCCCAAACCAACAGCCTGGAGGCAGAGATTCACAAAGCAAGGATTATTGAAATAGGAAATAAACATATTACTTAATTTCATTACATGGCAATATTGCAAAATTCTTCAGCTGCCAGAAAAggtttgcctttcttttttctttctgtgggCTAAATAAGAAGCTATCCCATAGACTGTCAGTGtagtgtgtaaatgtgtggatgagtaaacacatttgtacatACTTGTTAGAAAACGGGAAGGtggtatgattttttttttttttgtggattgTTTTTTCACGTAAGAAAATTATgttcaatcaaaataaactttaaaaaatatatatattttaaatgatcaatGCTATTGATTGAAACACAATAggtaatattgaaaacaaatgcagggtacatattttgttaaggCTATAATATgtcaataatttattaaaacaccagTAAGCCGGTATTTTAGCCACTAGAAATATGAGGGGCTGAAACttcatttacaaataatttgtgttttttgatgTTCATGATTTGCATTAATTGAAGTGTTTCATTTCAAGAATGTGAAAGCAGTACAAACAAAGCCTATTTTTCCAATGAGGAAAACTGGATTTTTTGAGGTTCTGCAGGAGCCGTCCTCACCAGGTCTGAGAGAGCGTCGTCACAGGGTTCTCCGTCCGTTGTCCCAATGACAGTCAGGCACTTCTGATCTGAAACAGTAGCCATGACATTTCTTATCTAAGGTCAGTGTTACACAAGTACcattttctaaaaaatacatataaatattttactacTCTTGTTTTCTAACTGTCTGCAGTCAGGCATGATGCTCTTAATAATACTAACtagtcaaatgtattcaatgcGAGGAGTAACTGCCAATATATATCCTGACTAAACCCTTTTTTTAGGTAGGAAAGACTCTGCCCAATGCATTGTGTATTATAATTGCAATCTAAAGCTGGATTCTTGTACTTAAGGTACAATCTTTCTTGTAAGAGCCACCATATGCAATTCAATGGAAGAGCCTGcttacagtaaaatatacacTTCAGTCATTGTCAATGTTGTTATGCCGTTACAGAGCACTCTCTGCACATTAAATGGGACTCGGCATACATTTCATTGCCTCTAATTTAATTCCCTGCACTGACCACAGAGTATAATCTGTAATTGAGCCTGGGGCagttatatgtgttttttttatttaaacttaataTGGTCACACAATTTATCAACCTTTCTaaaatgtggtttgtttttaaacaaatgttttcgtTAAGATAcgtaacaatataaaaaagtctatacattaaaaaagtacatttaaa

Function

GO: NA

KEGG:

id description
ko04530 Tight junction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177074 lncRNA downstream 212602 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 219690 11786414 ~ 11789926 (-) True G140764
TU177066 lncRNA downstream 383235 11625425 ~ 11626381 (-) True G140756
TU177065 lncRNA downstream 389690 11618789 ~ 11619926 (-) False AMCG00003110
TU177049 lncRNA downstream 409660 11598058 ~ 11599956 (-) True G140742
TU177212 lncRNA upstream 306353 12357446 ~ 12362204 (-) True G140883
TU177234 lncRNA upstream 551729 12602822 ~ 12603031 (-) True G140904
TU177236 lncRNA upstream 554659 12605752 ~ 12605952 (-) True G140906
TU177299 lncRNA upstream 677181 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA upstream 677181 12728274 ~ 12739791 (-) True AMCG00003138
AMCG00003117 mRNA downstream 47544 11937717 ~ 11962072 (-) True AMCG00003117
AMCG00003118 mRNA downstream 74217 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003113 mRNA downstream 188302 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003114 mRNA downstream 206744 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003110 mRNA downstream 386967 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003124 mRNA upstream 2787 12053880 ~ 12073797 (-) True AMCG00003124
AMCG00003123 mRNA upstream 39060 12090153 ~ 12098413 (-) True AMCG00003123
AMCG00003126 mRNA upstream 107717 12158810 ~ 12163340 (-) True AMCG00003126
AMCG00003127 mRNA upstream 311169 12362262 ~ 12385026 (-) True AMCG00003127
AMCG00003133 mRNA upstream 528896 12579989 ~ 12585968 (-) True AMCG00003133
TU177067 other downstream 275854 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 361997 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 1678244 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2771886 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3161776 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 799928 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 799928 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 799928 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 810333 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 1376201 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile