RNA id: AMCG00003120


Basic Information

Item Value
RNA id AMCG00003120
length 2599
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00003120
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12122044 ~ 12130905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCTGGAGAACTTCCATTCATTGCTTTTTCCCGGCTGAAATGGAAAGACGTCTGTCCGGCTCTGCGCTGCATTAGACGTGCTGCTGTCTGCTGAGAACATGTCTGTTGAACTTGAGGAAGGACGCACATCGGCATTGAAGTCCAGATGCGCTTTCGTGTTATGGACTATATTTCCGCACTCCTGCCTCATCTTGTCGCTGGTGGCATACGCTGCCTTTGGTGCTTTGTTATTTAGACACATCGAGGGCAACCAAAGGCCGATGATAACTAACTCAACGAACTCCTGGATCTCATCCAACGCCACGAACCTGTGCAACTCAACGAGGGATAACTATGACATATTCTTGTGCAAACTAGTGAGAACAGTGAATCAGCATACGGGAAATGGAAGTGATGATCAGCAAAGTTTGCTGGTCGCGATGAAATCTGTGATTTCCAAAAACTTTAAGGCGATCTGGCTGCAGCGCCCGGAGAGATGGTCTTTCATGGGCGCCTTGTTCTTTTGTTGCACTGTGTTCACAACAGTAGgtTATGGTGAAATCTACCCAGTGACTCTTCATGGAAAATTGGTTTGCATTCTGTATGCCATGGTGGGCATCCCTCTTATGCTTCTGGTAATCACAGATGTAGGGGATCTACTGGCCATGCTTCTTTCAAAGACCTACCACCGCCTGTACCGGCTGTGCAGGTTCCCATCCTGCCGCTGGACCTTCCGCAAGTGCAACAACAAGGCCCCGGAGTCAAGTACCCCTGGAACCTACACCTTTGAATCAGACATGGTTATTCGGGAGCCCATGGACATCAAGCATGTGCTCCATACACAGGGCTCGGTAAAGCGCAGGTCTGTGCAGCTGCGCAACGCTGAGATCTTTAACAAGATCATCTCCACAGAGAAACTTTCATTTGGCCCCCTGAAACGCAGCTGCTCCTGCCCCGAGCTCAACCAGATGCCGGCTTCCACACATTTCAAGATCTGGGACTTCACAGGGATAGGCGAGGAGCTGGACAAATTCAACGTTCCCATAACTGCCATCTTGGTGGTGGTGTTTGCCTACATTCTGCTTGGGGCGCTGACTCTCCCATTGTGGGAGAAAGAGTGGAACACATTCGATGCGTTCTACTTTTGCTTCATCACCTTGACCACCATTGGCTTCGGAGACATAGTTCCTAACCATCCGAATTTCTTTCTCCTCACCTCTCTCTTCATCATTATTGGGATGGCCATCATGTCAATGGCTTTTAAGTTGGGCCAATACAGGATTGTCAGCTGCTACCGCAGGTTTATTAGGTGCATTAGCGGTGGGATGGTGGAGAGGTATGAGGAGATGAGGGAGGGTGAAGTGGAGGCCAAAAACTAACTGGACATCCTCATGGATGCCTTTATTGCTAGTTttgtagcaaaaaaaaaaaaaaaaaaacagtattatgaCCTTTGAAGAAGTTCAATCCAGCCTGGTGAATATGTATTTCTGAAAACTTGAATCTAAAGTAAGAATCCAAATGGATTTATCAGGTCAGTGCATGAATAGTCTGATAATGCTTGCAAATATCAATTCTGTCTTAACTCAGGGGCACATACTATTCTTGCTGTATTGCCTGTTATACCGTCTGCCTGCTGTTGGAACTCTCctatttattctattttcaGCTCTGGGCAAAAGCCTAAGTGTATGGCATTGGATTTTTCATGGCAATGAAACCTATTAATTTGTCCTCCTCTGTAAATCATGGCTGATAAAAGCCAAAACAGGGGTCATGTCTATACAGTACATCAAGAATGAATGTAGATTAAGAAAGTTGAGCTTCactgttttccaaaatgtgGATTACAGATATTACAAATGTGACTGAATAGGAATGAACACCAGTCAGTGTTTCTCTCATCTGATAAATGTAATCAGCAGGTGTTGAGCCCAAAAACACAGTTCTCAAGTCATGTGACTTCTGGCTAGGCACACTGATGCCTTGCTCATTTTGGATTGCTGTAGAACTGGGATGTCAGTCCACCCCTTTCTTTCTCACAAAGCCATGGGCACAAAAAGTCCATACCCAGGTAAAATCACAAGCTCAGTTTTGTGATACTCCGCAGCAGTCTCATATGTTAATGGCTTACACAAGATGTGTGAAGaatcatattaaatacattttaaatgaacaagaCTGGTAATTTTACTGAAGAACGGTTAGTTGCCTTAAGTCTCTAACATTTTGGGTTTGGGctttttataatttcatttttaaaattgtagcTGTTAGAATTGAAAGTTAGGGATATGGCTTACAGATTAGTGATTAATAATCACTACATAGTATAAACAAGACCGTTACCATATAGATGTTTGCTACCTAGGGAAAACAATACTATACCttgaaaataataagtaaaagtGCTGTGCTTGACATGTCATGCCTCTTGTACATTTATACATGTaaggataaaagaaaaaacattaacttaacCTGTGATTTGTAATCTTGTGGCTTTCCCTTTACTATGAACTGCAGGcatcaaatagtttttgatATGTTTTGTTTCACACATCAGAAGTTGTGTATCAATAAAATGTGAAGGTATATTTTTTTGATGGTGCAGTTCTT

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K20007 KCNK18, K2P18.1; potassium channel subfamily K member 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177044 lncRNA upstream 488519 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 584090 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 631382 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 641007 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 874766 11245256 ~ 11247278 (+) True G140632
TU177186 lncRNA downstream 23908 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 155142 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 241094 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 253771 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 690970 12821875 ~ 12824630 (+) True G140961
AMCG00003122 mRNA upstream 110028 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003116 mRNA upstream 191943 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003115 mRNA upstream 210538 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003112 mRNA upstream 315688 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003111 mRNA upstream 324985 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003121 mRNA downstream 3220 12134125 ~ 12153351 (+) True AMCG00003121
AMCG00003125 mRNA downstream 103652 12234557 ~ 12239380 (+) True AMCG00003125
AMCG00003129 mRNA downstream 242913 12373818 ~ 12678159 (+) True AMCG00003129
AMCG00003128 mRNA downstream 550837 12681742 ~ 12682422 (+) True AMCG00003128
AMCG00003131 mRNA downstream 570223 12701128 ~ 12708232 (+) True AMCG00003131
TU176980 other upstream 634160 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 909933 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1365204 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2341592 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2791580 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 243061 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 599826 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 747780 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 975551 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2049875 14180780 ~ 14184643 (+) True G141331

Expression Profile