RNA id: AMCG00003121


Basic Information

Item Value
RNA id AMCG00003121
length 3202
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00003121
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12134125 ~ 12153351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAAGGCACTATACCTCCCCACACTTtcaaggtttctttttttttctctgcggAAACAATAAGACGcaaaagtgatattttaaatgtgcgCGGATTTTATTCAAGGTTGAATCTCTCCCCGGCGGACTGAAGAAGATGGGTCGGCTGCAGACCCTGCGGGAGTTCAGTCTGTTGAGGTGGCTGAGGGACGGGAGGCAGTCGAGGAGGCTGATTCTGCTGATCGTTTTCATCGCATTGCTTCTGGACAACATGCTTCTCACGGTGGTTGTGCCCATAATCCCCAGCTACCTGTACTCTGCAGACCACGATCACTCCTCTGTGAAGAACCAGACGGCCTCTCCAGAGCACAGCACTGTGACCTCAAATAATTTTCACACAATATACTCTTACTATGACAGTTCCACCATGATGACTGGGAACGCTTCTGAACAAACCACAGCTAGACCGGAGAGTTTCCCTATCCCTACAACACAGGCTCCAGTCAGCAGCACCACAGAGCCACAGTCTGACTGCCCCAAAAAAGACTCGGTCCTTCTCAATGAAAACGTGAAAGTCGGTTTGCTTTTTGCCTCCAAAGCCACTGTGCAGCTGATCACAAACCCATTCATTGGACCCCTCACCAACAGAATAGGGTATCAGATTCCAATGTTCGCTGGCTTCTGCATCATGTTCATTTCCACTATCAtgtttgctttttcaaagAGCTACACGTTGCTTTTCTTGGCGAGGTCTTTTCAAGGGATTGGGTCTTCGTGCTCTTCTGTGGCTGgaaTGGGAATGCTGGCGAGTGTCTACACGGATGACGAAGAGCGGGGCAATGCCATGGGAATCGCATTGGGAGGACTGGCCATGGGCGTGCTGGTCGGGCCTCCGTTTGGCAGCGTAATGTACGAGTTTGTGGGCAAGACGGCCCCGTTCCTGATTTTAGCCGTGCTGGCTCTGCTCGATGGAGCTCTGCAGCTCTTTGTGCTGCAGCCATCCAAAGCCGAACCAGAAAGCCAGCAAGGGACTCCACTGTTCACACTTTTGAGGGATCCGTACATCCTCATTGCTGCAGGATCTATTTGCTTTGCAAACATGGCAATTGCCATGCTGGAGCCGGCACTACCGATCTGGATGATGGAGACTATGTGTTCAAGAAAATGGCAGCTAGGCGTTGCTTTTGTACCAGCCAGCATCTCCTACCTTATTGGAACCAACATCTTTGGTATTCTCGCGCACAAAATGGGAAGGTGGCTTTGTTCTCTCATTGGAATGCTACTTGTGGGAGTAAGCATTTTATGCgtacCATTTGCCAAAAACATCTATGGATTGATTGTGCCTAATTTTGGAGTTGGTTTTGCCATTGGCATGGTTGATTCGTCTATGATGCCAATCATGGGCTACCTGGTGGACCTTCGTCACGTGTCCGTCTACGGGAGTGTATACGCAATAGCAGACGTGGCATTCTGCATGGGGTTTGCCATAGGTCCCTCAACCGGTGGCGCCATTGCGAGAAGTATTGGGTTTCCCTGGTTGATGACCATCATTGGGATCATAGACATCCTCTTTGCCCCCCTGTGCTTCTTCCTGAGAAGCCCCCCAGCCAAGGAGGAGAAAATGGCTATACTGATGGAGCACAACTGCCCAGCGAAAACCAGAATGTACACGACCCAGGACAGCGTGCAGCACTACCAgctggaagaggaggaggagtcgGAGTGCGACGAGTAGCTCCGGGAGCCAGACATGTATGTGACCCTTCAGAGCATCtattttattgtacaaaaaGCAGTGTTCCCACATGAGCGTCCCATTAAGAGCATCAGTCTGAAATGTGCGGTCATTCTACTGTACCACAGAAGCAAACCAAAGCTGTCCTTTCACCCAGTCACGTCTGCAGTACTTCGAGAAACATAACTAGCCACCAGCCTTAtcgagagaggaggggaggggaaagTGTATACAAAGGTTATCATAACTAAGGGAAGcatagaaaaaaaagctttgattttcttaaatatgtatttttcattatcaAATGTGTAGGTGTATGTGGTAGACATGTTGATTAGCGCTTGTCAGTGTAAGGAAACTGTTGCTACACACCTGTATGTGCAACATTGAGTCGCTGTAAGGTCCAGACCTGCTGGCAATCCAGTAATCACGGGCTGCATCTGCCTCCCCTTCTCAACTTGTATATATTAAGGGTACGGATTCATCAAACGATTAGGTGTGATGGAAAGAGACTAGCATCCTATCTATCATTTGTTATTTCTGGATCATTGTAAACTATGACAATTACGAAAAACTACGGCCATGGGCTATGTGGCTCTGTGCTTTTGGTGTTCTGGATTATGCTCATTTTCTTTAACTGGCTGGTTTTCAATGTATACAAGTGGCAGTAACATTTGGTGGCCGTCTGATCATGAAAGGCTGTTATAATTTTTCATGAAGTAAGATAACTAGATTTTGATACTGATTTACAAACAACGGGTTGTTTGGAGGCAACACAGTcatgaaaagtgaaaatgtatactGATCCTGCTGGAAGCCGTACAATCACAGTAAAATCCTTGAATGGAGAACTGCTGAAAATGAATAACCTCCATTTGccatcaacaaaaacaatgctATTTAATGGTTTTGGCAGCTCAACGGATGGCACATTGTCTGCTCGCTCCATGGCACTAACCTGTGCAGAGGGCATAATCGTGGCAAGGGGCACTGAGAGGCATATGAGACTGCGTGTAATGATTGACAAGACCCCGATCTCTCTGCTAGTGTGGAGATCTTACTGAAATTGAATTGAAGCATGACCTGTTTACCGGTTTCTATAATTAAAGTATGTTACCAGTCTCCATAAAGGATTTCATGCAGGCAGGTCTCAGCAGTTCAGAAAGTCAGTGTACATCTCAAGtgaatctctctctcatcccaCACTGCTTCACTCATTCAATGGACACTGTTTAAAAACACCGCAATGTCAAAATTCATTGCATAGTCCTTTACTGAAGCGGTTATGTACTTATTTGCACTATACAAAATTGattaagaaatattaatattactactTAGAGTGATTATATCTTGTGgaaagtgtttatatatttttattcaataatgtttttgtatataggacaaaattgtgtgtgtgtgtatgtatatatatatgtatgcatgtgtgtatatatatatatatatatatatatacatatatata

Function

GO:

id name namespace
GO:0015893 drug transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08155 SLC18A1_2, VMAT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177044 lncRNA upstream 500600 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 596171 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 643463 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 653088 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 886847 11245256 ~ 11247278 (+) True G140632
TU177186 lncRNA downstream 1462 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 132696 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 218648 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 231325 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 668524 12821875 ~ 12824630 (+) True G140961
AMCG00003120 mRNA upstream 3220 12122044 ~ 12130905 (+) True AMCG00003120
AMCG00003122 mRNA upstream 122109 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003116 mRNA upstream 204024 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003115 mRNA upstream 222619 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003112 mRNA upstream 327769 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003125 mRNA downstream 81206 12234557 ~ 12239380 (+) True AMCG00003125
AMCG00003129 mRNA downstream 220467 12373818 ~ 12678159 (+) True AMCG00003129
AMCG00003128 mRNA downstream 528391 12681742 ~ 12682422 (+) True AMCG00003128
AMCG00003131 mRNA downstream 547777 12701128 ~ 12708232 (+) True AMCG00003131
AMCG00003139 mRNA downstream 569975 12723326 ~ 12723550 (+) True AMCG00003139
TU176980 other upstream 646241 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 922014 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1377285 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2353673 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2803661 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 220615 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 577380 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 725334 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 953105 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2027429 14180780 ~ 14184643 (+) True G141331

Expression Profile