RNA id: AMCG00003125


Basic Information

Item Value
RNA id AMCG00003125
length 744
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00003125
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12234557 ~ 12239380 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCAACCTGCACCCAAGAGGTGTTTTACCATTGAATCGTTGGTAGCGAAGGATAATCCCCTGCCGGCTTCGAGATCCGAGGAGCCCATCCGACCGGCTGCCCTCAGCTATGCAAACTCAACCCAGATGAACCCGTTTCTGAACGGCTTTCACTCCAGCGGCAGGGGCGTCTACTCGAACCCGGACTTGGTGTTCGCGGAGGCGGTTTCGCATCCTCCCAACTCCGCTGTCCCGGTGCACCCCGTCCCCCCTCCCCATGCGCTGGCTGCTCACCCCCTTTCTTCCTCGCACAGTCCTCATCCTCTGTTTGCCAGCCAGCAAAGGGACCCCTCAACTTTTTATCCGTGGCTAAtacatagatatagatatttgGGACATAGATTTCAAgGGAACGAAACGAGCCCGGAGAGCTTCCTCTTACACAATGCACTGGCCAGGAAGCCCAAGCGCATCCGCACGGCGTTCTCCCCCTCGCAGCTGCTGCGGCTGGAGCACGCCTTCGAGAAGAACCACTACGTGGTCGGCGCGGAGAGGAAGCAGCTCGCACACAGCCTCAGCCTCACGGAAACTCAGgtAAAAGTGTGGTTTCAGAACAGAAGAACGAAATTTAAAAGACAGAAACTGGAAGAGGAAGGCTCAGATTCCCAACAGAAGAAGAAGGGGACCCATCATATCAATCGATGGAGGCTTGCGACCAAGCAGTCGAGCCCCGAGGAAATTGACGTCACTTCGGACGATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09317 EMX; homeobox protein EMX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177186 lncRNA upstream 75806 12154813 ~ 12158751 (+) True G140857
TU177044 lncRNA upstream 601032 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 696603 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 743895 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 753520 11480805 ~ 11481037 (+) True G140692
TU177201 lncRNA downstream 46667 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 132619 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 145296 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 582495 12821875 ~ 12824630 (+) True G140961
TU177316 lncRNA downstream 582495 12821875 ~ 12831106 (+) False G140961
AMCG00003121 mRNA upstream 81206 12134125 ~ 12153351 (+) True AMCG00003121
AMCG00003120 mRNA upstream 103652 12122044 ~ 12130905 (+) True AMCG00003120
AMCG00003122 mRNA upstream 222541 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003116 mRNA upstream 304456 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003115 mRNA upstream 323051 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003129 mRNA downstream 134438 12373818 ~ 12678159 (+) True AMCG00003129
AMCG00003128 mRNA downstream 442362 12681742 ~ 12682422 (+) True AMCG00003128
AMCG00003131 mRNA downstream 461748 12701128 ~ 12708232 (+) True AMCG00003131
AMCG00003139 mRNA downstream 483946 12723326 ~ 12723550 (+) True AMCG00003139
AMCG00003130 mRNA downstream 504366 12743746 ~ 12747836 (+) True AMCG00003130
TU176980 other upstream 746673 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 1022446 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1477717 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2454105 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2904093 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 134586 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 491351 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 639305 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 867076 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 1941400 14180780 ~ 14184643 (+) True G141331

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011676 True 1986 mRNA 0.41 3 NC_007124.7 19322686 ~ 19327657 (+)