Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00003130 |
| length | 1158 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 8 |
| gene id | AMCG00003130 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030139.1 |
| NCBI id | CM030139.1 |
| chromosome length | 23121578 |
| location | 12743746 ~ 12747836 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0030658 | transport vesicle membrane | cellular_component |
| GO:0004181 | metallocarboxypeptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K01294 | CPE; carboxypeptidase E |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU177211 | lncRNA | upstream | 358676 | 12384676 ~ 12385070 (+) | False | AMCG00003129 |
| TU177208 | lncRNA | upstream | 369915 | 12371999 ~ 12373831 (+) | False | AMCG00003129 |
| TU177201 | lncRNA | upstream | 457470 | 12286047 ~ 12286276 (+) | True | G140872 |
| TU177186 | lncRNA | upstream | 584995 | 12154813 ~ 12158751 (+) | True | G140857 |
| TU177044 | lncRNA | upstream | 1110221 | 11631963 ~ 11633525 (+) | True | G140738 |
| TU177315 | lncRNA | downstream | 74039 | 12821875 ~ 12824630 (+) | True | G140961 |
| TU177316 | lncRNA | downstream | 74039 | 12821875 ~ 12831106 (+) | False | G140961 |
| TU177437 | lncRNA | downstream | 363901 | 13111737 ~ 13111936 (+) | True | G141066 |
| TU177565 | lncRNA | downstream | 812762 | 13560598 ~ 13560839 (+) | True | G141156 |
| TU177596 | lncRNA | downstream | 977074 | 13724910 ~ 13735516 (+) | False | AMCG00003168 |
| AMCG00003139 | mRNA | upstream | 20196 | 12723326 ~ 12723550 (+) | True | AMCG00003139 |
| AMCG00003131 | mRNA | upstream | 35514 | 12701128 ~ 12708232 (+) | True | AMCG00003131 |
| AMCG00003128 | mRNA | upstream | 61324 | 12681742 ~ 12682422 (+) | True | AMCG00003128 |
| AMCG00003129 | mRNA | upstream | 65587 | 12373818 ~ 12678159 (+) | True | AMCG00003129 |
| AMCG00003125 | mRNA | upstream | 504366 | 12234557 ~ 12239380 (+) | True | AMCG00003125 |
| AMCG00003140 | mRNA | downstream | 122191 | 12870027 ~ 12875034 (+) | True | AMCG00003140 |
| AMCG00003141 | mRNA | downstream | 130853 | 12878689 ~ 12882741 (+) | False | AMCG00003141 |
| AMCG00003150 | mRNA | downstream | 197968 | 12945804 ~ 12948577 (+) | True | AMCG00003150 |
| AMCG00003149 | mRNA | downstream | 222869 | 12970705 ~ 12982068 (+) | True | AMCG00003149 |
| AMCG00003151 | mRNA | downstream | 252329 | 13000165 ~ 13000605 (+) | True | AMCG00003151 |
| TU177286 | other | upstream | 3979 | 12730731 ~ 12739767 (+) | True | G140939 |
| TU177209 | other | upstream | 369386 | 12373966 ~ 12374360 (+) | False | AMCG00003129 |
| TU176980 | other | upstream | 1255862 | 11486191 ~ 11487884 (+) | True | G140693 |
| TU176867 | other | upstream | 1531635 | 11209573 ~ 11212111 (+) | True | G140613 |
| TU176681 | other | upstream | 1986906 | 10754901 ~ 10756840 (+) | True | G140478 |
| TU177338 | other | downstream | 130849 | 12878685 ~ 12882998 (+) | True | AMCG00003141 |
| TU177434 | other | downstream | 358620 | 13106456 ~ 13110634 (+) | True | AMCG00003158 |
| TU177775 | other | downstream | 1432944 | 14180780 ~ 14184643 (+) | True | G141331 |
| TU177803 | other | downstream | 1539971 | 14287807 ~ 14288742 (+) | False | AMCG00003195 |
| TU177906 | other | downstream | 1853481 | 14601317 ~ 14605437 (+) | False | AMCG00003207 |
