RNA id: AMCG00003132


Basic Information

Item Value
RNA id AMCG00003132
length 2265
RNA type mRNA
GC content 0.35
exon number 8
gene id AMCG00003132
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12747436 ~ 12756469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTGTTCAGTGGAAGTAGTTTATCAGTTTAGATATCAATTTAGAGAATAAGTAATCACGCCCCATTGCCTCAGGAGACTTGGAATTCTCTCCATTTacctacaaaattaaaatgTCTGCTACAAGTGCAAATCCATCTACACCTAACACtacaaatacagcaaatacaacATCTGCACCTACAAATACATCTACACCTgctACGGATGGAACTACCTTAAGCGAGCCACAACAGTGTTTCTCTGATCTGGACATTGGTCTTGCTGCTGGGATCCCAGGCTTTGTGGCTGTTGCGCTCCTGGTagctttaattgtgtttgtgatcATGGTGAAGAAACAGAGAAAGGACCCTCCTAACATTGAGCAGCCTAATCAAGCAGAGACATCGGACTACTATAATGTTTCTGTGGATAGTCATTACATGTCACTAAATCAGCGCCCCTTACCACGGATCCCGGCTAAACAAGAAAATGTCTATCACTCAAACCTACCGAATGTTTACAACAATCATGCAGTCGTAAACAAATGACATCACCTGGAAATCCCGAAATGATTCTGTACATTGCAGCTGGTGCCTTCAGTGAAATTCAAATGGACTAATTATTTTTCATGGCATCCCAGCACAATCCTATATAACTTGAATTTTATAGGTTCCTCTCTTAATTGTTTGTCATGGTCCTGTATTAAGGAGAGGTGGGCATGTTTAATTTCAGCAAAGGGAAAAACCAGAGACTATTCTAAAGGGGGGGAAAACATCAGAAAGTAGTGCTTTGGGATTAGTTTTCAAGTTAGTCTAGTGGTTTGTAAACTTTGACTTCTATCTGAATCTAATGACTACATAAATCACTAAACCTGTGTGAAGACGACAGATTTTTTTCAGAGTGCACAAACAAGTAACTTCTGTCAACTATTTAATTTGCCTGCTATTTATCACAACTGAATTGCTAAttgttgtttataatttgattgtaagctaatacaatttatttttgtattaattaccaGGATATTAATAGTGAGTGTAACATGTGCGTAACATTTTATGGCATTATTAGAATTAATATTCTTGTATGATTGCAGTCACTCCAACAAGCAGGACAATGTTCAATGTAACAGACTAGCAGAGTAACTTAATGATTAACCAAgaaagtcaaattaaatgtatattttatgttccTGATTTGTCACGAAATGTCtgaatttcatgcttttattcaTTCCTGCTGCTAATGGCAAAGAGTTTGCAAATGGAAAGTTTTGCTAATTAATGATATATTTCTTTAGAttcataattacaaataaataacaggatCGAAATGAATGTACTTTGTTCTACTTTGAGTCATTCACTGATTAGCTTTACATGAATCAGATGTTTTCctaataaatgaattaatggataaaatatgtattttaaaatggcaagatAGTTTCTACTAAGATTGTCCTGCactattataaaacatttcagtgaGGAAAGTAGGAGAAACAAATCAGAGATATGCAAtgaatattcatttatttgctaCACAAAACTACACagataaaaactatttaaaaatacagtaaaagacTAACTGAATGACTGGCTTAAATAAGTCAGTACATTCTTAACCATTAATAAAATTAAGTGCAAAGCAAGATCTTATGTAACATAAgatcatatattatattatgtatgcaCTCTTGATCTGAAAATAATCCGATCAATCTTTTGCCTGAATATTATGAAGCAGAAATGGATTGGAAATTAATTGGATAGTGGAGATAGTGGACATTTTAACCTCACAGACTGAGGTGTGtgaaaagatacaaaaatacagacaaaGCTGATGAGGTGAGAGTGAAAGGGACCAACACTGCTCAGAAATTCAGCGTCTCTGACATCATCTTCCACCATCGCTCCAGCTGCTGCTCTTCAGTGTCTTTCTGCTGCAGATTCTTCAGCTGGAAATCCACCTATTGGACAGGAAGTCACAAATCCATTTGGGGATGGAAATGAATTTCCTCACAATGTAACATATCCCCAGTCCTGTCCCTCACACAGAAtagaaatgtctctgtgtgaAATTGGAATCATGTTTAATTTGctataaacatgtataaatgtataaaaactgacaaaaaaaattatcaaCTATTGTCAACCTCATGCAGAGTGTTATATAATGTTATGAATTGTATAGGTGTGCAGGAAACTTCATCCATTGTGATAAACaacatattattaaaaacaacaccacaCGAAATATCTACATTTGTTc

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177299 lncRNA downstream 7645 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 7645 12728274 ~ 12739791 (-) True AMCG00003138
TU177236 lncRNA downstream 141484 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 144405 12602822 ~ 12603031 (-) True G140904
TU177212 lncRNA downstream 385232 12357446 ~ 12362204 (-) True G140883
TU177329 lncRNA upstream 65433 12821902 ~ 12830926 (-) True G140971
TU177537 lncRNA upstream 650818 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 804050 13560519 ~ 13560839 (-) True G141175
TU177625 lncRNA upstream 1009487 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 1066945 13823414 ~ 13834549 (-) True G141219
AMCG00003138 mRNA downstream 7629 12728238 ~ 12739807 (-) False AMCG00003138
AMCG00003137 mRNA downstream 26015 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003135 mRNA downstream 35507 12710331 ~ 12711929 (-) True AMCG00003135
AMCG00003136 mRNA downstream 47641 12681612 ~ 12699795 (-) True AMCG00003136
AMCG00003134 mRNA downstream 102187 12614005 ~ 12645249 (-) True AMCG00003134
AMCG00003145 mRNA upstream 4373 12760842 ~ 12785286 (-) True AMCG00003145
AMCG00003142 mRNA upstream 67478 12823947 ~ 12848833 (-) True AMCG00003142
AMCG00003144 mRNA upstream 94561 12851030 ~ 12854491 (-) True AMCG00003144
AMCG00003143 mRNA upstream 105826 12862295 ~ 12869324 (-) True AMCG00003143
AMCG00003146 mRNA upstream 122340 12878809 ~ 12899145 (-) True AMCG00003146
TU177067 other downstream 1013674 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 1099817 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2416064 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3509706 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3899596 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 94552 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 94552 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 94552 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 104957 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 670825 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile