RNA id: AMCG00003133


Basic Information

Item Value
RNA id AMCG00003133
length 2073
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00003133
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12579989 ~ 12585968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAATTTTTCCACTGAGTTTGTGTCCGGGCAAGACCCTTTCAAGAATAAAACAAGCACAGATCAATTTACAGCGcataatgaaacattttcaacatttcaagGTCTGCAGTTAATTCAGCACTTTAAGGCAGTCATAATACCTCTCTATGCCGCTGTTGTCATCATCGGGATTATTGGCAACTTTTTGCTGGTGTTCGTGATCGTGAGAATGAAGAAACTGCACAATGTGACCAATTTCCTGATCGGAAATCTTGCCACTTCGGACGTCCTGATGTGCACCACCTGCATCCCCCTTACCTTAGCCTATGTGTATGAGCCCAAAGGCTGGCTGTTTGGCCATGCAATGTGTTACTTTGTCCTCTTCATGCAGCCAGTGACTGTCTATGTGTCTATTTTCACCCTGACCGCCATCGCCGTGGATCGGTACATGGCTATCGTGCATCCCTTGCGCCGCAGGATCTCGCTGAAGCTGAGCGCTTATCTGATGCTCTTCATCTGGATACTCGCCTGCTGCCTGGCTGTGCCCGCCATGGCCAACACTTACTACCTAGAGCTGAAGGACCAGGGCATCACCATCTGCGAGGAGTTTTGGCAGAGCAAAGAAAGTCAACGCCAAGCCTATGCCTTCTGTCTGCTGCTGATCACATACTTTCTGCCGCTGTTGGTGATTCTCATCTCCTACATCCGAATTTCGGTCAAACTGAAGAACAGGGTGATGCCCGGCAGTGTGACCCAAACCCAGGCGGACTGGGACAAAGCCAGGAAGAAGAGGACGTTTTGCTTGCTGGTCATAGTCGTAGTTGTGTTCGGCATTTCTTGGCTGCCCTTgcacatttttaacattattcGTGACATCAACATTGACAGGATAAGCAAGTATTATTTCAACCTGGTGCAGCTCTCCTGCCACTGGTTTGCGATGAGCTCGGTGTGCTATAATCCCTTCATCTACGCCTGGCTGCACGACAGCTTCAGGACAGAGCTGAAGAAACTGTTCACCTGGCGGAGGAGGGTCGCCCCGTATGGGAACAGCATCACTCTGGAGAACCTGACCTCCTCGCGCAGGCTCGCGGCCGGGCTGCGCAACAGCACGTGGCCGCAGTTCGCggggctgcagctgctgcactCCTGCCAGGCGCTGGTCATCCCGGGCTACTGCTGCGTGGTGTTCGTCGGCATATTCGGCAACTACCTGCTCATCTATGTCATCTGCAAGACCAAGAAGATGCACAACGTCACCAACTTCCTGATCGGCAACCTGGCGTTCTCCGACATGCTCATGTGCGCCACCTGCGTGCCCCTGACCTTGGCGTACGCCTTTGAGCCGCGGGGCTGGGTGTATGGGGTCTTCATGTGctattttgtgtttctgatgcagcCGGTGACCGTCTTCGTGTCCGTTTTCACGATGACGGTCATTGCCGTCGACCGGTACCATGCAACTGTGCATCCCCTGAAGCGCCGGCTCACCATCCCCGCCTGCGCCTACATCCTCACCGCTATATGGCTGCTGTCGTGCTTGCTGGCTATTCCCGCCCTGGCCCACACTTACCACGTCGCTTTTCCAGAACTGGACTTCTCCATCTGCGAGGAGTTTTGGGTAGGGATGGAGAAAGAGCGACTGGTCTATGCGTACAGCACACTGGTCCTCACCTATGTGCTGCCCTTAGCGGTCATCTCCTTATCCTACCTGCGGATTTCTGTCAAGCTGAGGAACCGCGTCGTGCCGGGCAACATTACGCAAAGCCAGGCGGAGTGGGACCGGGCCAGGAGGAGAAAAACCTTCCGCTTGCTGGTTTTGGTCGTTGCAGCTTTTGCTACTTGCTGGCTGCCGCTGCACATTTTCAACATGATGAAGGACATCGACATCAACTTGATTGACAAGCGCTACTTCAACTTGATCCAGCTGCTGTGCCACTGGTTCGCCATGATGTCCGCTTGCACGAATGCCATTCTGTATGCCTGGCTGCACGATAATTTCCGAGGCAAATTAAAGAAGATGTTTGTATGGCGGAAGAAGAGGATCGCACCCGTGACCAACTGTGTAATGACAAGtgttgttctttaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04314 PRLHR, GPR10; prolactin releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177212 lncRNA downstream 217785 12357446 ~ 12362204 (-) True G140883
TU177074 lncRNA downstream 782975 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 790063 11786414 ~ 11789926 (-) True G140764
TU177066 lncRNA downstream 953608 11625425 ~ 11626381 (-) True G140756
TU177065 lncRNA downstream 960063 11618789 ~ 11619926 (-) False AMCG00003110
TU177234 lncRNA upstream 16854 12602822 ~ 12603031 (-) True G140904
TU177236 lncRNA upstream 19784 12605752 ~ 12605952 (-) True G140906
TU177299 lncRNA upstream 142306 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA upstream 142306 12728274 ~ 12739791 (-) True AMCG00003138
TU177329 lncRNA upstream 235934 12821902 ~ 12830926 (-) True G140971
AMCG00003127 mRNA downstream 194963 12362262 ~ 12385026 (-) True AMCG00003127
AMCG00003126 mRNA downstream 416649 12158810 ~ 12163340 (-) True AMCG00003126
AMCG00003123 mRNA downstream 481576 12090153 ~ 12098413 (-) True AMCG00003123
AMCG00003124 mRNA downstream 506192 12053880 ~ 12073797 (-) True AMCG00003124
AMCG00003119 mRNA downstream 528896 12009616 ~ 12051093 (-) True AMCG00003119
AMCG00003134 mRNA upstream 28037 12614005 ~ 12645249 (-) True AMCG00003134
AMCG00003136 mRNA upstream 95644 12681612 ~ 12699795 (-) True AMCG00003136
AMCG00003135 mRNA upstream 124363 12710331 ~ 12711929 (-) True AMCG00003135
AMCG00003137 mRNA upstream 131653 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003138 mRNA upstream 142270 12728238 ~ 12739807 (-) False AMCG00003138
TU177067 other downstream 846227 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 932370 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2248617 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3342259 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3732149 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 265053 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 265053 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 265053 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 275458 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 841326 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile